LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo11g0180	ATGGCGAAAACGACGTCGTTACTCCTCTGCTCTCTTCTCCTCTTTGGAACCCTAGCTCTAATCCAGGCGAAGAAGGATTTGAAAGAAGTCACACACAAGGTTTACTTTGATGTTGAGATTGACGGAGAGCCTGCAGGTCGAATTGTAATGGGCCTTTTTGGAAAGACAGTTCCTAAGACAGCAGAAAACTTTCGAGCTCTTTGCACAGGTGAGAAGGGAACTGGAAAAAGTGGAAAGCCTCTTCATTTCAAAGGTAGCTCATTCCATAGGATCATACCTAGCTTTATGATCCAGGGAGGTGATTTTACACATGGAAATGGAATGGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGACGAGAACTTTAAGCTAAAGCACACTGGACCAGGACTTCTATCAATGGCAAATGCTGGTCCTGATACCAATGGTTCACAGTTCTTCATTACTACTGTTACAACTAGCTGGTTGGATGGAAAGCATGTTGTTTTCGGAAAGGTGCTTTCTGGAATGGATGTTGTATACAAGATTGAAGCTGAAGGAAAACAAAGTGGCACTCCCAAGAGCAAGGTCACAATTGCTGACAGTGGTGAACTACCTCTATAA	606	0.4323	MAKTTSLLLCSLLLFGTLALIQAKKDLKEVTHKVYFDVEIDGEPAGRIVMGLFGKTVPKTAENFRALCTGEKGTGKSGKPLHFKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGKHVVFGKVLSGMDVVYKIEAEGKQSGTPKSKVTIADSGELPL*	202

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo11g0180	201	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	36	196	IPR002130	GO:0000413\|GO:0003755
	Amo11g0180	201	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	19	201	-	-
	Amo11g0180	201	PIRSF	Peptidylpro_ismrse	18	200	IPR024936	GO:0003755
	Amo11g0180	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	52	67	IPR002130	GO:0000413\|GO:0003755
	Amo11g0180	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	88	100	IPR002130	GO:0000413\|GO:0003755
	Amo11g0180	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	131	146	IPR002130	GO:0000413\|GO:0003755
	Amo11g0180	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	146	158	IPR002130	GO:0000413\|GO:0003755
	Amo11g0180	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	159	174	IPR002130	GO:0000413\|GO:0003755
	Amo11g0180	201	CDD	cyclophilin_ABH_like	32	197	-	-
	Amo11g0180	201	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	83	100	IPR020892	GO:0003755\|GO:0006457
	Amo11g0180	201	Gene3D	-	20	200	IPR029000	-
	Amo11g0180	201	SUPERFAMILY	Cyclophilin-like	29	199	IPR029000	-
	Amo11g0180	201	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	35	198	IPR002130	GO:0000413\|GO:0003755
	Amo11g0180	201	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1	19	201	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo11g0180	Amo-Chr11	2713401	2716290	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo11g0180	46	178	U-box Gene Family	AT5G67530	46.269	3.84e-28	108

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo11g0180	K01802		-	gmx:100792140	369.777

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo11g0180	11	2713401	2716290	Amo11g0180	11	2713401	2716290	ECH