Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0165 ATGGCATTGGAGAATCTTCCTTTGATCATAAAGCTTAAAATTTCTTCCAAACGAAAGCTTGGCGTAAATGAAAGCGTCGAGGTCAGGAGCATGGAGGAAGGCTTTCAGGGATCATGGCACCCGGGGAAAGTTGTCCATTCTGGGAAACTGCAGCGCCATGTCAAATATGATAACGTATTACTTGATGATGAGGTGAATTACCTTGTGGAAAAGGTGACTGTTCCGAAGGTATTGGATGGCGATAGCGACTCTTCAAATTGCAACATTCGTGGTTGGATTAGGCCGGTGCCTCCTAAGAGGGAATTTGAAAGTAGGGAACTTAAATTTGGTCTGTGTGTTGATGTGTACCATGAAGAAGCTTGGTGGGAAGGGGTTATATTTGATCACTGTGATGAAAAGCCAGAGAGGAGTGTATATTTTCCGGATTTGGGTGATGAGATGAAGATTGGAGTTCATCAAATGCGGATAACTTATGATTGGAATGAGGTTACTGGGGAGTGGCAGTCGAGAGGGAACTGGGTTTTTCTTGAAGTTCTTGAGGAGTATGAGAGGAAGATGTTTATTTCAGTTTCAGTGAAGCAAGTTTGGTATGATGTAAGGACCAAAAAGGACTTCGCCAAGATTGGCGAATGGACTTTTAATGAGAAAGAGTTATGGAAAAAAATGGTAATGGAGGTAGTTGATGATTACTTAAGGCTTACACTAGGAGAAGTTTGCTCCTCCTTAGATCTTCCAAGGAGTTTATTGAGAGAAACACCGGAGATGGAGTCGGTTGAATCTACGGCTAATGTTGACTTCAATCAGGAAGTTGATATGGCCAACTCTTTGGATGTTGCGAACTCTGCTGGCCAGTCGAGTAGCATTTGTATCACAGCTGCTCATTGTGATGGTACCTCTGATAATGCATTTGGTTCTGATGATGGGATTGCTGAACTCCCTATGGAAGAAGGTGAGTCATCAAATTTGTTGAACGCTGATCAAAAGTGGCCTACCATTCAGGATCAAGGGGTCAAAACTGTCCATCAGAAAGAAGTTTCAGTGCAGAAAGAACCAGTTACTCCTGTTCAAGAGGTCTCAACTCAGTTTCACAAAGAAATATCCTGCGATGTATTTAATGGAAGAAAACATAGAAAGCTTCGCAGCTCAACTCAACATTGGGAACCTCTCAGATTGTCTGACGTTGAGTTATGTCCTGATGCTATTGAAGAATATGCACAGGCACCTAAAAGAGCTTGCCCTGAAAAAGCACGAAAACATCTTGCGTATCTTGGATGGGAAATTGAGTGGACAAAGCATAAAGCAAGCGACACTTGCTATAGGTACAGATATAGGTCGCCTGATAAACAGGGTGTTTACTACTCTCTCAGTCGGGTTTGTAAGTATGTGGCACAGAACTCGGACATGAACCCTTTGCCGTCCCAAAATGATCAGAGTATGATGCAACTTACAGCTGACAATCATCTTGAACCTATTCTTATTGATGAATCAGAAAAGAGTCAGGATCTAAATGATCAGAGTGCGATGCAACTTAGAGATGACAATCATCTTGCACCTATTCTTATTGATCAATCAGAAAAGAGTCATGATCTAAATATTTTGCCACCAGTTGTGTCGTCTCCTGTGGATGAAGTTGCAGATGAACCTGAGTTTTGTCCTCAAGCTGTTTTAGAATATAGCTTGAATAGATCTGCAATGCGAGGGCCTGACATGAAAGTGGGTAGGTCCAAAGCAAAGAGGCATCTATTGGCTGAAGGATGGAGCTATCACTATGCAAACCCAAGAAATAAAAGACAAGGGTTTGTGTATATCCCTCCAGACAAGGGAAGAAATCTCCCAACACTCCATGCAGCTTGCCATTATTGTATTGAACAAAATGTTGATAAATGGACCAAGCTCGGAATGCAACCTTTGAATGCACAGGATAATGTTGACCAGGTTTGGAGTGCAAATTTATTGCAGAAAGCGTCCCAATGGCTTCGAGAGGAACGCATGGTACCTCCCACAGAAGTCATAACTTCAAGTGGATCAAACCATAGTCGGAAGCGGAAACTCTTGAACAATACAAAGCCCAGCTTATCTAAGCACCAAAGAAATGGATTACCTCGACGCGTGCTGCGATCAAATAAAAGGGTGCAAAAGGTGTCTACCCCTTCTTTGTCACACCAGAAACCTCAGAATGTACTCTCTTGGTTGATAGACAACAACATTCTGTTGCCAAGGTCTAAGGTTTCTTACAAGCCAAAAGGCAGGCTCTGTTTAGCTGAAGGGAGAATAACCAGTGATGGAATCAAGTGTAATTGTTGTTTGAAAGTATATAGTCTTGCTGGCTTTGAAAGTCATGCTAGTGGCTGTAGTACACGCAGACCGGCTGCAAGTATTATTTTAGAAGATGGTAGATCACTATTAGATTGCCTGATAAAAACAGTGGAAGATCATATGACAAGGGAAGCTATGGCAAAACCACCAAAATATTTTCGTAAAGGCGAGAATGACAATATTTGTTCTGTTTGCCACTATGGTGGGAATCTAATTTTATGCGATCAATGTCCATCTTCATTTCATGTGACATGTCTAGGTCTGAAGAACATTCCTGAAGGTGACTGGTTTTGCCCATCATGTCGATGTGCAATTTGTGACAAACGTAACATAGAAGAAGAGGAGGGAGATTTCCTTGTTTGCATTCAGTGTGAACATAAATATCACTTTAAGTGCCTCAGAACTAAATATGCAACTAACTCGAAAAGATATAGTAAAAACTGGTTCTGCGGAAGGGACTGTGAAAAGATATATTTTGGTCTCCATAAGCTACTAGGAGAGCCAGTTTCAGTGGGCATTAACAATCTAACTTGGACATTGGTGAAATATATAAACTCTGAGAGTAGTGATCCGTGTACTACTAAAGGTTACTTATTGCCAGAAAGTTACAGCAAACTCAATGTTGCACTCTCAGTGATGCATGAATGTTTTGAGCCCCTAAAGGATCCTTCGTCTACCAGAGATCTCATGGAAGATGTTTTATTCAGTCGATGGTCAACACTTAATCGATTGAATTTCCATGGTTTCTATACCGTACTTCTGGAGAGAAATGAAGAACTGATAAGTGCAGCAACTGTTAGGGTTTACGGAAAGAAGGTAGCAGAATTGCCTCTTATTGGTACCAGATTACAGTATCGTCGACATGGAATGTGCCGCATTTTGATGAATGAGCTTGAAAAGAGGCTCATGCAGTTGGGAGTGGAGAGGCTCGTTTTGCCTGCTGTTCCTAGTGTTGTAGACACATGGACTGGTTCTTTTGGCTTTGTAAAGATGACAGAGTTCGAGAGGTCGCAATTCTTGGACAATACTTTTTTAGATTTTCAGGATACCATCATGTGCCAGAAGCTGCTGAAGATTCCATCTCCAGAATCGGTTTTGTTAATAGAGTCCCAACAAAGGACACAGCATGTTTTGCCTGGAAACAAGTTAAATTTTGACGCTGATCTGATATCTGAAGTATTACACCAAGCAGAAGAAACTGACAAAGGAGAGAGAAAGAATTCACAAATCCACAATAATTGTGCTGGAAGCAATGATCATTGCAGTAATGGTGCCATTGACATTGAGCAAGTCACACCGGTGAATAAACCAAGTCCTGAGGATCAACAGTGGCAGAATGATCCACAGAGCTCTATTGTAACACAAGCTGACAGTAATAATGGCTCACCATATAAGTGCTACTACAAAAGAAGGAAATACACAAAGTTTTAG 3747 0.4145 MALENLPLIIKLKISSKRKLGVNESVEVRSMEEGFQGSWHPGKVVHSGKLQRHVKYDNVLLDDEVNYLVEKVTVPKVLDGDSDSSNCNIRGWIRPVPPKREFESRELKFGLCVDVYHEEAWWEGVIFDHCDEKPERSVYFPDLGDEMKIGVHQMRITYDWNEVTGEWQSRGNWVFLEVLEEYERKMFISVSVKQVWYDVRTKKDFAKIGEWTFNEKELWKKMVMEVVDDYLRLTLGEVCSSLDLPRSLLRETPEMESVESTANVDFNQEVDMANSLDVANSAGQSSSICITAAHCDGTSDNAFGSDDGIAELPMEEGESSNLLNADQKWPTIQDQGVKTVHQKEVSVQKEPVTPVQEVSTQFHKEISCDVFNGRKHRKLRSSTQHWEPLRLSDVELCPDAIEEYAQAPKRACPEKARKHLAYLGWEIEWTKHKASDTCYRYRYRSPDKQGVYYSLSRVCKYVAQNSDMNPLPSQNDQSMMQLTADNHLEPILIDESEKSQDLNDQSAMQLRDDNHLAPILIDQSEKSHDLNILPPVVSSPVDEVADEPEFCPQAVLEYSLNRSAMRGPDMKVGRSKAKRHLLAEGWSYHYANPRNKRQGFVYIPPDKGRNLPTLHAACHYCIEQNVDKWTKLGMQPLNAQDNVDQVWSANLLQKASQWLREERMVPPTEVITSSGSNHSRKRKLLNNTKPSLSKHQRNGLPRRVLRSNKRVQKVSTPSLSHQKPQNVLSWLIDNNILLPRSKVSYKPKGRLCLAEGRITSDGIKCNCCLKVYSLAGFESHASGCSTRRPAASIILEDGRSLLDCLIKTVEDHMTREAMAKPPKYFRKGENDNICSVCHYGGNLILCDQCPSSFHVTCLGLKNIPEGDWFCPSCRCAICDKRNIEEEEGDFLVCIQCEHKYHFKCLRTKYATNSKRYSKNWFCGRDCEKIYFGLHKLLGEPVSVGINNLTWTLVKYINSESSDPCTTKGYLLPESYSKLNVALSVMHECFEPLKDPSSTRDLMEDVLFSRWSTLNRLNFHGFYTVLLERNEELISAATVRVYGKKVAELPLIGTRLQYRRHGMCRILMNELEKRLMQLGVERLVLPAVPSVVDTWTGSFGFVKMTEFERSQFLDNTFLDFQDTIMCQKLLKIPSPESVLLIESQQRTQHVLPGNKLNFDADLISEVLHQAEETDKGERKNSQIHNNCAGSNDHCSNGAIDIEQVTPVNKPSPEDQQWQNDPQSSIVTQADSNNGSPYKCYYKRRKYTKF* 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0165 1248 CDD PHD2_CHD_II 834 873 - -
Amo11g0165 1248 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1009 1110 IPR016181 -
Amo11g0165 1248 ProSiteProfiles Zinc finger PHD-type profile. 831 876 IPR019787 -
Amo11g0165 1248 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 13 503 - -
Amo11g0165 1248 MobiDBLite consensus disorder prediction 1204 1236 - -
Amo11g0165 1248 SUPERFAMILY FYVE/PHD zinc finger 810 874 IPR011011 -
Amo11g0165 1248 SMART ring_2 875 929 IPR001841 -
Amo11g0165 1248 SMART ring_2 834 873 IPR001841 -
Amo11g0165 1248 MobiDBLite consensus disorder prediction 1204 1234 - -
Amo11g0165 1248 PANTHER PHD ZINC FINGER PROTEIN 13 503 - -
Amo11g0165 1248 PANTHER PHD ZINC FINGER PROTEIN 512 1171 - -
Amo11g0165 1248 Gene3D - 985 1128 - -
Amo11g0165 1248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 876 929 IPR013083 -
Amo11g0165 1248 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 512 1171 - -
Amo11g0165 1248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 825 875 IPR013083 -
Amo11g0165 1248 SMART PHD_3 833 874 IPR001965 -
Amo11g0165 1248 SMART PHD_3 875 926 IPR001965 -
Amo11g0165 1248 MobiDBLite consensus disorder prediction 669 700 - -
Amo11g0165 1248 Pfam PHD-finger 833 875 IPR019787 -
Amo11g0165 1248 CDD NAT_SF 1024 1084 - -
Amo11g0165 1248 Pfam Tify domain binding domain 756 806 IPR032308 -
Amo11g0165 1248 Pfam Agenet domain 24 98 IPR008395 -
Amo11g0165 1248 MobiDBLite consensus disorder prediction 1170 1190 - -
Amo11g0165 1248 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 984 1129 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0165 Amo-Chr11 2449377 2457469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0165 29 464 PHD Transcription Factor Family AT5G58610 31.685 1.19e-62 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo11g0165 Agenet 5e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0165 - - aip:107644722 2430.21