Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0146 ATGACCTCTCCTGCACCCGCCCTCCACTCCATCCGCGCCTCCCTCTCCGACCTCTGCGCTCCACCGCCGGATCCACGCCGTCCCTTTCACAACCCCCGCTGCTTCTCGGCGTTCGCTCGCCGCCTCCAGCTAGTCCTCGATCAACTCCTCCTCTTACTCCCGCCCACTCCACCGCTGCCCGTTCAGACGGCGCTGAAAGGCATTGCCGGCGACCTATCCAAGGCGGCGGAAACTGTGTCGTTGTACGAAAACGCGAGCAAGATCTTCGTTTTGTTGAACTGCAAAACGCTGTGCTCGTCGCTGCAAGAACAAACCGCCGCTATTTCGGGGTGGCTGGCGTTGCTTGATTCGGGGGTTGAGGAGTTCCCTGAGCTTCAAAAGAAGGTCTTCGATCTTAGCAGAGACATGAAGCTCGCACAATTTAGGGTCACAGAGAATGAAGAGAGGGTGTTGTGTGCATTGGAGAAGGAAGGGCAAGGGAGAGATACAAGCAAAGCAGTGCAGAGTGCCATTATGATGGATTTGGCTCGTGCTTTTGGGGTCGATCCTGATGATCATGCTGAGTTACTCACCCAAGTGAACCTCTTCAAAGACGATGCCTTGCGCTCCAAGTCGGTCCTCGAGACAAGAATTTTGGCTTCCCTGGAGAGAATTCTTAAGAACTGGTCCGTCGAACCTGCCATAGTGACCCGGAATATGGACTTTGATATTGAAGATGATGATGATGCTAATGCTCCAATTATGCCCTTCAAAAATTTCCTTTGCCCATTGACCAAGGAAGTGATGACAGACCCTGTTGTGGTGCTGGAGTCCTCTCAGACCTATGAGAGAACTGCAGTTGAGTACTGGTTTTCGAGGTGCATTGAGAATGGCATCGACCCCATTTGTCCGGTCACTGGAACCGTTCTTAAGTCCTTGGAGCTGAAGCCCAACATTGGCTTGGCAGGGGCAATTGAGGAGTGGATTGGCAGGGTTGTTGAATATCATGTTAAGTCTGCAGCACAGCATCTGATTGAGGAACCGTTGTCTATTGATCACGTCGAGCGAGCGCTGGATAATATTTATAAGGTTTCTGAAGAACACCCCACTAGCAGATATGTTATCAGGAATGCTGGCATTGTGGTATTGATAGTGACTGTTCTTAGCAAGAACTCTAAAACTATTGGATCGCGTTTGAGAAGCAAAGTTCTAATGACTTTACTTAGCATAGCCAAGGACGAAGAAAGCAGGAAAATAATGCTTGAAAGGGGTATCACTAGATTGGCTATACATAGTCTTATTGGGAACTCTGAGAAAGAGAGAGAGTATGCTGTCAAGTTGTTATCAGAGTTCTGCAACGAGGATGATTGTTGCGTAAGAATTGCATTGGAGAAAGGTGCATTAGTTCTTCTGTCAAGTATGGCTGGAAATCTGGAATATCCCTCTCTGTCTAATTTAGCTGAGGAAGTCTTAAAGAAGATGGAGAGAGTGGAAGCTAATGTTCAATGCTTGGCCGCAGCTGGAAGATTTGAACCATTACTTTCACGGTTACGTGATGGTTCTGATGGCGTTAAGATAGAGATGGCCTCTTTGGTGGGAAGGATGACATTGACAAATAGCTGTAAAGAACAAATTGCTAGGGACGGCGCCAGAGTATTTGTCGAATTGCTGTCTAATCCAGAAGGAATGGGACCAAGTTTGCAAGCATTATATAACTTGTCTGGATTGGATGACAATGCAGCCATCCTTGTTGAGTCTTCAGTCCTTCCATCTCTTCTGGAAATTCTTTTCAATGAGCAGGATCCTTCATATGAGTTTAAGTCATTAGCTGCTTCAACAATTGCAAATATAGTCTCAAAGCCAGGGCATTGGGAGCTAGCATCTGCTGACAAGAAGGGAAATCCAATGCAGTCTGAAAATATTGTTTTCGGACTTTTGGGGATCTTAAACTATGTGTCCTCTGAATGTCAAGTGACCATTCTTCGCATTCTTTGCGGGATTACTTCATCTCCTCAAGCATCAGAGTCGGTAGCCATGCAAATCATGTCTGGTGGTAGCTTTAGAATGGTCGCGCCATTTCTTCAACACTCGGAAATCGAACACAGACTCTTGGCTTTTAAGCTTACCAGACAACTATCCGAATGGTGTAGTCAAGATCTAACAAACGAGCTAAGGCTTTCAAACACACTTACCATTCTTGAAGATAAACTATTAGATAACCAATCAACAAACGATGAGAGATCAGAAGCAGCACAGATACTAGCCAACCTTTCGCTCTCAGAAGCTGAAGTGAAGACACTTTTAGGAGACAACTTTGTGGAATGGAGTGTAGCTACTCTGAAAAACCAGAGGCGTGTTACAAATGCAAGATTTTCACACTCTGGCATGCAGGAAGGCCTTCTTGGACTCTTGCTTCACTATTCTAAAAACCTTGATCAACAAACTCTTAATGTAATCACAGGAAATCGCCTCATGTCAGTTTTCTGCGAGCAGCTGGACTATACCTCGAAACCAAAGGTAAAACGCCTTGCTGCTATTGGCTTAAAAAACTTGTCAGAGCTCGGAAGCTTGCGCAATACGGATAGAGAGTTTGGAGTTGGACAATCATCTTCTAGCAGCTTATTCTGTTCTTACCTTGTCTTCATGTGTGGGAAAGCTTCTAATCAACCTTCCACATGTCCCATTCACAACATCCCTTGCGACGACTCCACTCAACTGTGCCTCCACAAGACCAATTCTATCAAGCCATTGGTTGATCTCCTAAGTGACAACGACACAAGTGTTCAGGTCGCCGCTGTGGATGCACTATCTACTCTCCTTTTAGATTACCATTCGCGTAGTTTCAAAAGAACTGTTGATGAGCTTGAGCATCTAGGCGTGGTTGATTCAGTGATCACTCTTTTCACGGAGGTTCGATCTGGGGAGCTTCAGGAGAAGACAATTTGGATAATAGAGAAGATACTGAGAGTGGAGAATCATAGCCAAAGATATGCACTCAATCAGCCTCTTGTGAGAGGCTTGGTTGAAGCATTCAAGCATGGGAATAGCAACACAAGGAAGCATGCTCAAGATGCTCTAACACTCCTTAAGCAGTTATCAGGTATTAGTGGTAAGGAATCAAGTCAATCTAGATCTAGGAGATAG 3123 0.4579 MTSPAPALHSIRASLSDLCAPPPDPRRPFHNPRCFSAFARRLQLVLDQLLLLLPPTPPLPVQTALKGIAGDLSKAAETVSLYENASKIFVLLNCKTLCSSLQEQTAAISGWLALLDSGVEEFPELQKKVFDLSRDMKLAQFRVTENEERVLCALEKEGQGRDTSKAVQSAIMMDLARAFGVDPDDHAELLTQVNLFKDDALRSKSVLETRILASLERILKNWSVEPAIVTRNMDFDIEDDDDANAPIMPFKNFLCPLTKEVMTDPVVVLESSQTYERTAVEYWFSRCIENGIDPICPVTGTVLKSLELKPNIGLAGAIEEWIGRVVEYHVKSAAQHLIEEPLSIDHVERALDNIYKVSEEHPTSRYVIRNAGIVVLIVTVLSKNSKTIGSRLRSKVLMTLLSIAKDEESRKIMLERGITRLAIHSLIGNSEKEREYAVKLLSEFCNEDDCCVRIALEKGALVLLSSMAGNLEYPSLSNLAEEVLKKMERVEANVQCLAAAGRFEPLLSRLRDGSDGVKIEMASLVGRMTLTNSCKEQIARDGARVFVELLSNPEGMGPSLQALYNLSGLDDNAAILVESSVLPSLLEILFNEQDPSYEFKSLAASTIANIVSKPGHWELASADKKGNPMQSENIVFGLLGILNYVSSECQVTILRILCGITSSPQASESVAMQIMSGGSFRMVAPFLQHSEIEHRLLAFKLTRQLSEWCSQDLTNELRLSNTLTILEDKLLDNQSTNDERSEAAQILANLSLSEAEVKTLLGDNFVEWSVATLKNQRRVTNARFSHSGMQEGLLGLLLHYSKNLDQQTLNVITGNRLMSVFCEQLDYTSKPKVKRLAAIGLKNLSELGSLRNTDREFGVGQSSSSSLFCSYLVFMCGKASNQPSTCPIHNIPCDDSTQLCLHKTNSIKPLVDLLSDNDTSVQVAAVDALSTLLLDYHSRSFKRTVDELEHLGVVDSVITLFTEVRSGELQEKTIWIIEKILRVENHSQRYALNQPLVRGLVEAFKHGNSNTRKHAQDALTLLKQLSGISGKESSQSRSRR* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0146 1040 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1035 - -
Amo11g0146 1040 Gene3D - 333 849 IPR011989 -
Amo11g0146 1040 Coils Coil 480 500 - -
Amo11g0146 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 324 IPR013083 -
Amo11g0146 1040 ProSiteProfiles U-box domain profile. 248 328 IPR003613 GO:0004842|GO:0016567
Amo11g0146 1040 Pfam U-box domain 252 322 IPR003613 GO:0004842|GO:0016567
Amo11g0146 1040 Gene3D - 886 1026 IPR011989 -
Amo11g0146 1040 SMART Ubox_2 252 321 IPR003613 GO:0004842|GO:0016567
Amo11g0146 1040 SUPERFAMILY RING/U-box 249 322 - -
Amo11g0146 1040 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1035 - -
Amo11g0146 1040 SUPERFAMILY ARM repeat 330 616 IPR016024 -
Amo11g0146 1040 SUPERFAMILY ARM repeat 583 1024 IPR016024 -
Amo11g0146 1040 SMART arm_5 894 934 IPR000225 GO:0005515
Amo11g0146 1040 SMART arm_5 531 568 IPR000225 GO:0005515
Amo11g0146 1040 SMART arm_5 406 446 IPR000225 GO:0005515
Amo11g0146 1040 SMART arm_5 710 752 IPR000225 GO:0005515
Amo11g0146 1040 SMART arm_5 569 612 IPR000225 GO:0005515
Amo11g0146 1040 SMART arm_5 805 846 IPR000225 GO:0005515
Amo11g0146 1040 SMART arm_5 361 405 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0146 Amo-Chr11 2230431 2235903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0146 250 1029 U-box Gene Family AT1G20780 27.353 4.66e-72 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0146 - - ccaj:109816409 1452.96