Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0117 ATGGGGGGTTCCTCACCTTGTGCTTCTTGCAAATTGTTGAGGCGGCGTTGCACCAAAGAATGCATCTTTGCTCCTTATTTTCCTTCTGATGATCCTCGCAAGTTTGCCATTGTGCACAAAGTCTTTGGCGCTAGCAATGTCAGCAAAATGCTTCAGGAACTTCCAATTGATCAAAGAGGAGATGCTGTAAGCAGTTTAGTTTATGAGGCAACTGCAAGAGTGAGAGACCCTGTGTATGGTTGTGTTGGAGCAATATCATACCTTCAAAATCAAGTTACACAATTACAAATGCAACTTGCAGTGGCTCAGGCAGAGATTCTAAGCATCCATCAGATGCAACAAGACCCTTCTAATAACAATACTACCTTATTACCAAGTCAATTATTAGATCAAGATTATAGTGAAAAGTTTCTGCTCCTATCATCAGCTGAAAACAATAACAACTATGACTTTCTTCCCCAATATCTTAGCTTTGCTTCTTCTTCTTCTTCTTCTTCAAATGTATTCCAAGACTCTGAGCCTCTTAAGAGAGAGTCTTTTTGTTAA 546 0.3974 MGGSSPCASCKLLRRRCTKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPIDQRGDAVSSLVYEATARVRDPVYGCVGAISYLQNQVTQLQMQLAVAQAEILSIHQMQQDPSNNNTTLLPSQLLDQDYSEKFLLLSSAENNNNYDFLPQYLSFASSSSSSSNVFQDSEPLKRESFC* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0117 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 179 - -
Amo11g0117 181 Coils Coil 85 105 - -
Amo11g0117 181 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Amo11g0117 181 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Amo11g0117 181 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 2 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0117 Amo-Chr11 1586424 1587273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0117 3 140 AS2 family AT2G30130 76.812 5.52e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo11g0117 LOB 8.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0117 - - aip:107644491 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0117 11 1586424 1587273 Amo11g0117 11 1586424 1587273 ECH
Amo11g0117 11 1586424 1587273 Amo01g0526 01 7881457 7882391 hybridization