Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0116 ATGATTCGGGTCCATGCCGGTTTTTCAAACAGGGTCGGGTCGAACGCCCCTTTCAACCCAGCCCAACTCCCCGACTCATCCTCTTCTCTCCATTCTTCCCCTTATCTATCTTCCAACTATGCCAGAGTCCCCGCCGTCGGTATTGTTGCTCCGTTACCCACATCTCCTCCTACTCCGTTTAACTCCTGCGTCGCCACCCGCGTCTCTGCCCTCTCCCTCACGCAGCTCTACCAAGTTCCAAAACCTCATCGCGCCGCCGTTCGTCTCACCCTAGCCGCCCGTCGCGCTGCTCTCCTGTCTCACCGTGGTCGTTCGGTAATTCTCTTGCCCGTCATCCGTCCGTCGTGTGCGTCTACAGCTTGCCGTCGTCCGTCGCCAGCTCGCCAGTGTTTGTCTCGTCGTCCGTCGCTCTCCCTCAAGCCTCTGCTCACTGCCCTCGCCGAAGCCCCCACCACTATCACCGCCAGCGGTTGCCATCGTTGCCTCTCGAAGGTCTGCTCGGAGCTGTTGGTGTCTCTGTTTTTGTCCTCGTCGTCAAGCCTCTGTCTTCGAGCCCCTTCTCTCTCTGTCCAAGCATACTCCCTTCCTCCCTCGCCGCCAGTAAGAAAAGCTGCTTCAATTTATGTGTTTGTTTATTACATCAGAGAAGACCGATTGCCCAACATTGAGGAGGGGGGAACAATGCACGAGAGGCATTCACAATGGCAGCAACAAGAAGCATTGGCAATGCTATCCTCCGAAACCACTCCCTCTATTTCCCTCGCCAGTCTCTTCCAAAGGTATGGTTTCCCCCCTTCCCAAATTCCCCACATCATCTCCAACAACTCCTTTCTCTTAGATTCCAACATACCTGAACTCGAGAAATCACTTGCCACTCTCTTCTCCTTCCGAATTCCCCAAAATGCCGTTGTCTCCCTCATTCGCAACTGCCCTGCCGTGTTGGAACCCAAGTTCCTTCAAAACTGGGAGCAGGGATTGTCGAAGCTCAAGGCCATGAACCCTTCCTCATCCATGATTGTGAACTTCTTGGAGTGTTCTAGAAGATTCCAACTGGACCCGGTTGAGGCTTCCAAGAAAGTCGAGGAATTGAAGGGATTGGGATTTTCTGATGACGTTGTGTGGAAGGTTTTGGAGGGTTTTCCGAGTGTGATTGCAGTGAGCAGGAGGCAACTTGCTTCTGTGATTGAGTTTCTGGTGGAATTTGGGATTCCGAGGGATGAGGTGGTTGATCGAGTTGTGCGGTTGAACCCAAGGGTTTTGGGAATTGGGGTTGAGCAGAGGTTGAAGCCCCTGATTCGTGAATTGGAGGAGTTAAGATTTCCTAGGAATGAAATTAGGACCGAGGATGGTTTGCTGAGGGCTTGTTTTGAAGTGAAGTTAAAAGTGGATTGCTTGTGCGATCACGGTTTGATTCGAAGTGATGCTTTGAAGTTGTTATGGAAAGAGCCAAGGTTGATAACCTATGATGTAGAGTCCATTGAGAAAAAGATTGGGTTCTTGGTGCAGAGGATGAATTATAGTGTTGATTGTTTGCTTCATGTTCCTGAGTACTTGAGTGTGAACTTTGAGAAGCAGATTGTTCCTAGGTACAATGTGATGGAGTACTTGAAAGCGAAAGGCGCGCTTGGTTTCGAGGTTGGACTAAAGGACATGGTAAAGCCAACCAGGCTTAGATTTTACAATCTTTATGTCAAGCCCTATCCAGAGTGTGAAAAGATTTATGGGCGGTTTTCTGGAATTACCAAAGTTAAAAGTAAGCATCCACCTGGTCTATGGAAACTCTTTAAACCTCCCAAGTTCCTGACAACCGATGAAGATGCGAAGAATTTGAAGTCATTCATGAACACACTGCAAGCTGCTAACTACATTCTCTAG 1875 0.4965 MIRVHAGFSNRVGSNAPFNPAQLPDSSSSLHSSPYLSSNYARVPAVGIVAPLPTSPPTPFNSCVATRVSALSLTQLYQVPKPHRAAVRLTLAARRAALLSHRGRSVILLPVIRPSCASTACRRPSPARQCLSRRPSLSLKPLLTALAEAPTTITASGCHRCLSKVCSELLVSLFLSSSSSLCLRAPSLSVQAYSLPPSPPVRKAASIYVFVYYIREDRLPNIEEGGTMHERHSQWQQQEALAMLSSETTPSISLASLFQRYGFPPSQIPHIISNNSFLLDSNIPELEKSLATLFSFRIPQNAVVSLIRNCPAVLEPKFLQNWEQGLSKLKAMNPSSSMIVNFLECSRRFQLDPVEASKKVEELKGLGFSDDVVWKVLEGFPSVIAVSRRQLASVIEFLVEFGIPRDEVVDRVVRLNPRVLGIGVEQRLKPLIRELEELRFPRNEIRTEDGLLRACFEVKLKVDCLCDHGLIRSDALKLLWKEPRLITYDVESIEKKIGFLVQRMNYSVDCLLHVPEYLSVNFEKQIVPRYNVMEYLKAKGALGFEVGLKDMVKPTRLRFYNLYVKPYPECEKIYGRFSGITKVKSKHPPGLWKLFKPPKFLTTDEDAKNLKSFMNTLQAANYIL* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0116 624 Gene3D Transcription termination factor 3, mitochondrial 394 577 IPR038538 -
Amo11g0116 624 Pfam mTERF 257 446 IPR003690 GO:0003690|GO:0006355
Amo11g0116 624 Pfam mTERF 461 559 IPR003690 GO:0003690|GO:0006355
Amo11g0116 624 PANTHER CGI-12 PROTEIN-RELATED 266 448 IPR003690 GO:0003690|GO:0006355
Amo11g0116 624 PANTHER CGI-12 PROTEIN-RELATED 448 615 IPR003690 GO:0003690|GO:0006355
Amo11g0116 624 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL 266 448 - -
Amo11g0116 624 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL 448 615 - -
Amo11g0116 624 SMART mt_12 508 542 IPR003690 GO:0003690|GO:0006355
Amo11g0116 624 SMART mt_12 336 369 IPR003690 GO:0003690|GO:0006355
Amo11g0116 624 SMART mt_12 476 507 IPR003690 GO:0003690|GO:0006355
Amo11g0116 624 SMART mt_12 374 404 IPR003690 GO:0003690|GO:0006355
Amo11g0116 624 SMART mt_12 410 441 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0116 Amo-Chr11 1577578 1581997 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo11g0116 mTERF 5.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0116 - - aip:107646489 723.391