Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0096 ATGGAGATATCATTGTTAAAGATGCTTGTTAATGGCATATCCTCGTTTCTGAATTTATCGTTTTCTGGAAACATCAACTCGGAACCCATCTCAAAGTATTACCAAAAGGCAGAGGAGATACTTAGGCTGTTGAAGCCAATTATTGATGCAATTGCTCATTCTGAGTTAGCTTCTGATGAAGTGCTTAGTAAGATATTTGAAGAACTTGGTCATGCAATTGATGAATTAAGGGAGCATATTGAGAACTGGCACCTGTTGTCCAGCAAAGTTTACTTTGCTATGCAAGTTGAACCCTTGATATCTAGGATAAGGACTTTGGGGCTCAATATTTTCCAGCAGCTGAAGGTTTCTCAGCAATGTCTCCCTGATGAATTGAGTTCTGATCATCTGGAGCATTGTGTTCAGAAACTTAAGCATTTGGGACATGAAGAAGTATCAGCAGTCATTAAGGAAGCTATTACTGAACAACGGGAAGGTTTAGGACCCAGTTCAGAGGTCCTGGCAAAAATTGCTGATAGCCTAGGTCTAAAGTCTAATCAGGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAAATTGAAGGAGAATGCTGAGCAAACTGAAAAGACTGCAGAAGCTGAATATATTGATCAAATGATCGCTGTTGTAACACGTATGCATGAGCGGCTTAGTATGCTTAAGCAAGCTGAGAGTAGCAGCCCAGTTCCAGTACCTGCTGATTTTTGTTGTCCTCTCTCTTTGGAGTTGATGACTGATCCAGTGATTGTGGCATCAGGACAAACCTATGAGCGGGCTTTCATTAGGAACTGGATTGATCTTGGACTTACTGTTTGTCCGAAGACTCGGCAGGCACTAGCTCATACCAACCTAATACCTAACTACACTGTAAAAGCACTAATTGCAACTTGGTGTGAGTCAAACAATGTGAAACTGGTTGAGCCCTCGAAGTCCACTAGTTTAAATCAAGCATCTGTCATTCAGGGGTATATGGAGTCTGGTACAACCAGGGACTCACCTGTCTTTTCTCATTCCAGGGGCAACCAGCCATCCTCACCTGAGTCGGTGCGTTCTCATTCTTTTAGTTCACCAGGTAATAACATAACTTCTGCTGGAATTCAGCGAGAGGGAACATCACCATTGCATCCCCGTTCAATTTCTGAAGGTTCCTTAAGTGGTATGGTTAATGGGCAGCATATGGATCTTGCTGGAGCAGGTTTAGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTGGATTCAGTTGGCCAACCCTCAATGTCGCCATCTAAAAGGGAATCGTCTGATGCCTTTATCCCTGACCAAGCCCAAGCCCATGTTAGAACTATTTCTTACTCCAGTGCACTTTCTAGTGGAAATTTCCCCCAAGAAACACCAGGTGATGATAATAGTTCTCCTCAGTTGTCAAGCAGTCCAGCATACAGTAGAGATGTTTCCGGTGAATTAAATCCCGGCCCAGATTCTGCTAGTGCTGCTACCGTTCCATCTTCACATAGAGAACCAGAGTTCCCACCTCGATCGGAGACAAGGTCCCGAACATCTTTGTGGCAACGACCATCCCAGAGGCTTGTTCCTAGGATGGCATCCTCTCCTGCTGCTGAAACTAGAGCTGATCTTTCTGCTATTGAATCCCAGGTTCGGAAGTTGGTTGAGGGCTTGAAGAGCACCAATATTGATACTCGGAGAGAGGCAACAGTAGAAATTCGGCTTCTTGCCAAGCATAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTACCATATTAGTTGAGTTACTCAGATCACCAGATACAAGGATCCAGGAAAATGCTGTTACTGCACTTCTGAACTTATCAATCAATGACAATAACAAAAGTGCAATAGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTGCTGAAGACAGGGAGCCCAGAAGCCAAGGAGAATTCTGCTGCCACTCTATTCAGCTTATCAGTGATTGAGGAAAACAAAATTAGCATTGGTAGGTCGGGGGCTATTGGACCGTTGGTTGATCTATTAGGGAATGGAACCCCTAGGGGTAAGAAAGACGCAGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGAATTGTGCAAGCTGGTGCCGTGAAGCACCTTGTGGAGTTAATGGACCCTGCTGCCGGAATGGTTGATAAGGCAGTGGCAGTCTTAGCAAATCTGGCCACAATTCAAGAAGGAAGAGTTGCTATTGGTCAGGAAGGTGGGATTCCTGTTTTGGTCGAGGTTGTCGAGTTGGGCTCTGCAAGAGGAAAAGAGAATGCAGCAGCAGCTCTTCTGCATCTATGCTTACATAGCAACAGATTCTTAAGCATGGTGCTTCAGGAAGGAGCTGTCCCACCATTAGTCGCGTTATCACAGTCAGGTACCCCGAGGGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAGAGACATAATGCGGGGAGGGGCTGA 2502 0.4464 MEISLLKMLVNGISSFLNLSFSGNINSEPISKYYQKAEEILRLLKPIIDAIAHSELASDEVLSKIFEELGHAIDELREHIENWHLLSSKVYFAMQVEPLISRIRTLGLNIFQQLKVSQQCLPDELSSDHLEHCVQKLKHLGHEEVSAVIKEAITEQREGLGPSSEVLAKIADSLGLKSNQEVLIEAVALEKLKENAEQTEKTAEAEYIDQMIAVVTRMHERLSMLKQAESSSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIRNWIDLGLTVCPKTRQALAHTNLIPNYTVKALIATWCESNNVKLVEPSKSTSLNQASVIQGYMESGTTRDSPVFSHSRGNQPSSPESVRSHSFSSPGNNITSAGIQREGTSPLHPRSISEGSLSGMVNGQHMDLAGAGLDDRSASSDESSVDSVGQPSMSPSKRESSDAFIPDQAQAHVRTISYSSALSSGNFPQETPGDDNSSPQLSSSPAYSRDVSGELNPGPDSASAATVPSSHREPEFPPRSETRSRTSLWQRPSQRLVPRMASSPAAETRADLSAIESQVRKLVEGLKSTNIDTRREATVEIRLLAKHNMDNRIAIANCGAITILVELLRSPDTRIQENAVTALLNLSINDNNKSAIANAGAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKISIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGRVAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSMVLQEGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHNAGRG* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0096 833 MobiDBLite consensus disorder prediction 414 435 - -
Amo11g0096 833 SUPERFAMILY ARM repeat 550 823 IPR016024 -
Amo11g0096 833 MobiDBLite consensus disorder prediction 454 482 - -
Amo11g0096 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 317 IPR013083 -
Amo11g0096 833 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Amo11g0096 833 MobiDBLite consensus disorder prediction 332 436 - -
Amo11g0096 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 715 IPR000225 GO:0005515
Amo11g0096 833 PANTHER U BOX DOMAIN-CONTAINING 7 829 - -
Amo11g0096 833 MobiDBLite consensus disorder prediction 454 542 - -
Amo11g0096 833 Gene3D - 527 830 IPR011989 -
Amo11g0096 833 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Amo11g0096 833 MobiDBLite consensus disorder prediction 513 529 - -
Amo11g0096 833 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Amo11g0096 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 714 755 IPR000225 GO:0005515
Amo11g0096 833 Coils Coil 179 209 - -
Amo11g0096 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 591 633 IPR000225 GO:0005515
Amo11g0096 833 SUPERFAMILY RING/U-box 223 312 - -
Amo11g0096 833 CDD RING-Ubox_PUB 240 282 IPR045210 -
Amo11g0096 833 MobiDBLite consensus disorder prediction 332 392 - -
Amo11g0096 833 Pfam Armadillo/beta-catenin-like repeat 621 660 IPR000225 GO:0005515
Amo11g0096 833 Pfam Armadillo/beta-catenin-like repeat 664 701 IPR000225 GO:0005515
Amo11g0096 833 Pfam Armadillo/beta-catenin-like repeat 582 619 IPR000225 GO:0005515
Amo11g0096 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 632 674 IPR000225 GO:0005515
Amo11g0096 833 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 829 - -
Amo11g0096 833 SMART arm_5 703 742 IPR000225 GO:0005515
Amo11g0096 833 SMART arm_5 662 702 IPR000225 GO:0005515
Amo11g0096 833 SMART arm_5 580 620 IPR000225 GO:0005515
Amo11g0096 833 SMART arm_5 621 661 IPR000225 GO:0005515
Amo11g0096 833 SMART arm_5 743 783 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0096 Amo-Chr11 1231055 1238052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0096 196 833 U-box Gene Family AT2G23140 61.395 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0096 - - gmx:100813786 1310.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0096 11 1231055 1238052 Amo17g0712 17 16452403 16455668 PCT
Amo11g0096 11 1231055 1238052 Amo07g0865 07 15695780 15700001 PCT
Amo17g0712 17 16452403 16455668 Amo11g0096 11 1231055 1238052 PCT
Amo07g0865 07 15695780 15700001 Amo11g0096 11 1231055 1238052 PCT