LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo11g0094	ATGGAGAGTAAATCAATTGTTCTGTTGGAAAGATATGAGTTAGGAAGATTACTAGGGCAGGGTACCTTTGGGAAGGTTTACTATGCACGGAGTGCGATAACTAACCAGAGTGTGGCTATTAAGATGATTGACAAAGATAAGGTTATGAAAACTGGGCGTGCCGAACAAATCACGCGCGAGATATCTGTTATGAGAAGGGCTAGGCATCCCAATATTATACAGCTTTTCGAGGTTATGGCCACCAAGACTAAGATTTACTTTGTTATTGAAATTGCTAAAGGTGGTGAACTCTTCGACAAGGTGTCCAAGGGAAAACTCAAGGAAGATGTTGCTCACAAGTATTTTAGGCAGCTAATCAATGCAGTAGATTATTGTCACAGTAGAGGCGTATACCACAGAGATATAAAGCCGGAGAACATTCTGTTGGATGAAAATGGGGACCTAAAGATATCTGATTTTGGGTTAAGTGCGCTCGCGGAGTCCAAGCGGCAGGATGGCCTACTCCATACACCTTGTGGCACCCCTGCCTATGTTGCTCCTGAAGTCATCAAAAGGAAGGGATATGATGGTGCAAAAGCTGATATTTGGTCTTGTGGAATTGTTCTATTTGTCTTATTGGCAGGTTTTCTCCCTTTTCATGATGCAAATTTGATAGAGATGTATAGGAAGATAAGCAAGGCTGAATTAAAATTCCCGAGTTGGTTCCCGCCAGAAGTATGCAGGTTGTTGAGAAAGATGCTGGATCCAAATCCTGAAACCAGGATTACTATTGCCAAGATTACAGAAAATTCTTGGTTTAAGAGAGGACCTAAAGCTAAGCACAAAAAACTTGACGCAGAAACCACTAGCGTCTCTTCAGGTACAGTTTCTGATCTAAGTGATGAAGGTGAAGGTCTAGCAGCAGAAGCAAAGGAAGAACCAGTTGTGGCAACAAGTATAAATGCATTTGATATCATCTCCCTTTCTGCTGGTTTCGATCTTTCTTCATTTTTCGAAGACAGTTTTCAGAAAAGAGAAGCAAGGTTTAGTTCAAGACAACCTGCATCGGTCATCTTTTCCAAGCTGGAAGATGCTGCCAAGCGACTAAAGCTGAAGATAAAGAAAACAGCAGCTGGCTTGGTGAAATTGGATGGTTTAACCGAAGGTAGGAAGGGGGTTTTATCAATTGATGCCGAGATTTTCGAGGTTACTCCTATGTTCCATCTGGTGGAGGTGAAGAAATCCAATGGAGATACATTGGAATACCAGAAAATACTGCAAGAGGGTATAAGACCTGCACTTAAGGATATTATTTGGGTCTGGCAAAATGACCAACAGCAGCAACCACAAGAGCCAGAAGAACAGCCGCAGATAGATGACCAGCCGCCACAACCACCCGAGTCATAA	1386	0.425	MESKSIVLLERYELGRLLGQGTFGKVYYARSAITNQSVAIKMIDKDKVMKTGRAEQITREISVMRRARHPNIIQLFEVMATKTKIYFVIEIAKGGELFDKVSKGKLKEDVAHKYFRQLINAVDYCHSRGVYHRDIKPENILLDENGDLKISDFGLSALAESKRQDGLLHTPCGTPAYVAPEVIKRKGYDGAKADIWSCGIVLFVLLAGFLPFHDANLIEMYRKISKAELKFPSWFPPEVCRLLRKMLDPNPETRITIAKITENSWFKRGPKAKHKKLDAETTSVSSGTVSDLSDEGEGLAAEAKEEPVVATSINAFDIISLSAGFDLSSFFEDSFQKREARFSSRQPASVIFSKLEDAAKRLKLKIKKTAAGLVKLDGLTEGRKGVLSIDAEIFEVTPMFHLVEVKKSNGDTLEYQKILQEGIRPALKDIIWVWQNDQQQQPQEPEEQPQIDDQPPQPPES*	462

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Amo11g0094	461	ProSiteProfiles	NAF domain profile.	308	332	IPR018451	GO:0007165
Amo11g0094	461	SUPERFAMILY	Protein kinase-like (PK-like)	8	267	IPR011009	-
Amo11g0094	461	Pfam	Protein kinase domain	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Amo11g0094	461	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	2	447	-	-
Amo11g0094	461	Gene3D	Transferase(Phosphotransferase) domain 1	99	309	-	-
Amo11g0094	461	SMART	serkin_6	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Amo11g0094	461	ProSiteProfiles	Protein kinase domain profile.	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Amo11g0094	461	CDD	CIPK_C	314	428	-	-
Amo11g0094	461	PANTHER	-	2	447	-	-
Amo11g0094	461	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	130	142	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo11g0094	Amo-Chr11	1205946	1208371	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo11g0094	1	440	CBL-interacting serine-threonine protein kinases	AT5G58380	67.615	0.0	631

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Amo11g0094		Pkinase	4.6e-77	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo11g0094	-		-	gmx:100790905	687.952

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Amo11g0094	11	1205946	1208371	Amo11g0094	11	1205946	1208371	ECH
Amo11g0094	11	1205946	1208371	Amo17g0705	17	16273274	16275935	ECH
Amo17g0705	17	16273274	16275935	Amo11g0094	11	1205946	1208371	ECH
Amo11g0094	11	1205946	1208371	Amo17g0705	17	16273274	16275935	PCT
Amo17g0705	17	16273274	16275935	Amo11g0094	11	1205946	1208371	PCT

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