Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0088 ATGGCTACACATATGCAAGATCCACCTTCGAAATCTAACCCTAACAATCCCAATGCAAACAACAATGCCGTCAATGCTCATCAATTACCTCCTCAACCTCCGCCTACGGCGGCGGTTCCGCCATCTTCCACCGGCGTAACCTCATCCGTATTCATCCGCGGTGACGGTTGTGAAGGTGGCAGTCCGAACGCGCATCACCGGAGGGCTCACTCGGAGGTCAGTTTCCGGCTGCCGGACGACATGATGGACCTATCGCCGTCGGATCCGTTCACCGGCGGCTCATCCACCGCCAGCCTCGAGGAGATCGGATCCGAGGACGACCTCTTCTCTACCTACATTGACGTCGAGAAGCTCAGCGGCGGAGGAGGGGCTCCGAACGGTTCGATTCAGGGCGGAAATGGATCGGATCAGAGCGGTTACGGCGGCGCCGGAACAAGCGGCAACAACGAGGAAGATAAGAGTCCTGGTGGAAACGGTAGCGCTGGCGCCGGAGGAGCTAGGCCGAGGCACCGGCATAGTAACTCCGTCGACGGTTCTACGACAGGCGTGTTCGGAGAGATCATGGAGGCGAAGAAAGCAATGCCTCCTGATAAGCTCGCTGAGCTATGGACCATTGATCCGAAACGCGCCAAGAGAATACTTGCTAATCGGCAATCTGCTGCACGTTCAAAAGAGAGAAAGGCCCGCTATATACAAGAACTCGAGCGCAAAGTTCAGACCCTTCAGACCGAAGCTACAACTCTTTCTGCCCAATTGACCCTATACCAGAGGGACACAACAGGTCTGAGTAGTGAAAATACCGAGCTCAAACTTCGGCTACAAGCCATGGAACAACAAGCACAACTTCGCGATGCTCTTAACGACGCATTGATGAAAGAAGTAGAGAGGCTAAAGATTGCCACCGGGGAGGCAATGAAGCCCTCTGAATCTTTTAATCTAGGAATGCAACAGATGCAATTTGCAGGGTCAAATTTTTTTCCAGTCCCACAAAGTTCAGGTCCTCCTGGTCTGCAGAGCATACCAATGATGTCATTCTGTCACCCCCCATCCAACATTCCTCATGAAATGCAACATTCAAATTCTCATCAACTCGCTGATATATTGCATAACGACCAGCTCGGTCGCTTGCAGGGACTCGACATTAGCAGCAAAGGATCAACCCTTGTGAAAGCCGAAGGCCCCTCACTTTCTGCGAGTGAGAGCAGCAATACATTTTGA 1218 0.5263 MATHMQDPPSKSNPNNPNANNNAVNAHQLPPQPPPTAAVPPSSTGVTSSVFIRGDGCEGGSPNAHHRRAHSEVSFRLPDDMMDLSPSDPFTGGSSTASLEEIGSEDDLFSTYIDVEKLSGGGGAPNGSIQGGNGSDQSGYGGAGTSGNNEEDKSPGGNGSAGAGGARPRHRHSNSVDGSTTGVFGEIMEAKKAMPPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSENTELKLRLQAMEQQAQLRDALNDALMKEVERLKIATGEAMKPSESFNLGMQQMQFAGSNFFPVPQSSGPPGLQSIPMMSFCHPPSNIPHEMQHSNSHQLADILHNDQLGRLQGLDISSKGSTLVKAEGPSLSASESSNTF* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0088 405 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 206 269 IPR004827 GO:0003700|GO:0006355
Amo11g0088 405 SMART brlzneu 204 268 IPR004827 GO:0003700|GO:0006355
Amo11g0088 405 CDD bZIP_plant_RF2 209 258 IPR044759 GO:0003700|GO:0006355
Amo11g0088 405 SUPERFAMILY Leucine zipper domain 208 259 IPR046347 GO:0003700|GO:0006355
Amo11g0088 405 PANTHER BZIP TRANSCRIPTION FACTOR 1 402 - -
Amo11g0088 405 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 402 - -
Amo11g0088 405 Pfam bZIP transcription factor 208 266 IPR004827 GO:0003700|GO:0006355
Amo11g0088 405 Gene3D - 207 260 - -
Amo11g0088 405 MobiDBLite consensus disorder prediction 1 105 - -
Amo11g0088 405 MobiDBLite consensus disorder prediction 60 77 - -
Amo11g0088 405 MobiDBLite consensus disorder prediction 1 27 - -
Amo11g0088 405 MobiDBLite consensus disorder prediction 121 181 - -
Amo11g0088 405 Coils Coil 224 251 - -
Amo11g0088 405 MobiDBLite consensus disorder prediction 126 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0088 Amo-Chr11 1127212 1129767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0088 13 405 bZIP Transcription Factor Family AT2G40620 49.761 2.28e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo11g0088 bZIP_1 4.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0088 - - gmx:100775607 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0088 11 1127212 1129767 Amo11g0088 11 1127212 1129767 ECH
Amo11g0088 11 1127212 1129767 Amo17g0689 17 15553547 15556805 PCT
Amo17g0689 17 15553547 15556805 Amo11g0088 11 1127212 1129767 PCT