Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0057 ATGTCGTATGTGCCTCCACACCTCAGAAACTCAACCACCACAACAACAACCACTACCACCACCACCACGACGGCGAAAACCTCCTCCGTAACCCAAGAAAACAACAACGACAATATCAGCAACAATGTTAACCATCAAACTAAGCTCGCATTCCCTTCTTATTCAAACTCACACTCTCACTCTCACTCCAACGGCACCAATGGAACCAATGGCAACGCCAACAACCACAATTCTGTGTCCCATGGTTCTCGCCGCCCCACCGCCACTCCGCAGCCGTCACGGATTTTCGCAGCTCCCGAGCCAGTTTTCCCTCACTGGCAGCCATCCGAGCGCGTTTCACGCATGAGCCCCGACCAGATTGAAGAGGTCCGCCTCCGACTTAACCTTGATGTCACTATTGCATCAGACTCTCCAGCTGCTCCTGCACCAATTGAATCATTTAGTGATATGTGTGTGCATCCAAGTATCATGAAGGATATTGCATATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTACTTGGCTGTGCTGAAACTGGTAGTGGGAAAACTGCAGCTTTCACAATTCCTATGATACAGCATTGCATGGCTCAACCTCCTATTCGGCGTGGTGATGGTCCTCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCGTTGAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAGCTAAGAGCAGGAGTTGAAATTGCTGTTGCAACCCCTGGAAGATTTATTGATCATTTACAACAAGGCAATACTTCCCTTTCTAGAATTTCTTTTGTTGTTCTAGATGAAGCAGATAGAATGCTTGATATGGGTTTTGAGCTACAGATACGAGAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCCACTATGCCTGTGGAGATTGAAGCATTATCAAAGGAATACTTGGCTAATCCTGTACAAGTGAAAGTTGGAAAAGTCAGTAGCCCAACAACAAATGTTTCACAAACACTTGTGAAGGTCTCTGAAAATGAGAAGATTGATCGACTTCTAGATTTGCTTGTAGAAGAGGCGTCACAGGCTGAAAAATGTGGTCATCCATTTCCACTAACAATAGTGTTTGTTGAAAGAAAGACGAGATGTGACGAAATTGCTGAAGCACTTGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAAGGTGAAAGAGAGGCTGCCCTGCATGATTTTCGGAGTAGCACCACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCGCATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACATCGGATTGGAAGGACAGGGCGTGCAGGAACAACAGGCCTATCGACTTCATTCTACACTGATCGTGACATGTTCCTCGTTGCAAATATAAGGAAAGCAATTGCTGATGCTGAATCTGGGAACACAGTGGCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACACTTTGGATTGGGACCTGCTTCAATTAACATCGAAGATAAATATAGATTTATGATTACTACCTCAAACATTAAAAAGGTAGGCGCAGCTGATAGTGCTTGGGATGATTAG 1773 0.4484 MSYVPPHLRNSTTTTTTTTTTTTTAKTSSVTQENNNDNISNNVNHQTKLAFPSYSNSHSHSHSNGTNGTNGNANNHNSVSHGSRRPTATPQPSRIFAAPEPVFPHWQPSERVSRMSPDQIEEVRLRLNLDVTIASDSPAAPAPIESFSDMCVHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCMAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFELQIREIMRNLPEKHQTLLFSATMPVEIEALSKEYLANPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQGEREAALHDFRSSTTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGTTGLSTSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAAAAQKEANIALSKHFGLGPASINIEDKYRFMITTSNIKKVGAADSAWDD* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0057 590 CDD SF2_C_DEAD 364 502 - -
Amo11g0057 590 SMART ultradead3 164 367 IPR014001 -
Amo11g0057 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 376 534 IPR001650 -
Amo11g0057 590 Pfam DEAD/DEAH box helicase 169 339 IPR011545 GO:0003676|GO:0005524
Amo11g0057 590 Coils Coil 231 251 - -
Amo11g0057 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 513 IPR027417 -
Amo11g0057 590 Pfam Helicase conserved C-terminal domain 376 493 IPR001650 -
Amo11g0057 590 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 555 - -
Amo11g0057 590 Gene3D - 358 552 IPR027417 -
Amo11g0057 590 Coils Coil 534 554 - -
Amo11g0057 590 MobiDBLite consensus disorder prediction 1 95 - -
Amo11g0057 590 MobiDBLite consensus disorder prediction 1 90 - -
Amo11g0057 590 CDD DEADc 156 353 - -
Amo11g0057 590 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 298 306 IPR000629 -
Amo11g0057 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 352 IPR014001 -
Amo11g0057 590 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Amo11g0057 590 SMART helicmild6 412 493 IPR001650 -
Amo11g0057 590 Gene3D - 105 356 IPR027417 -
Amo11g0057 590 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 58 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0057 Amo-Chr11 781419 789463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0057 145 515 Eukaryotic Initiation Factors Gene Family AT1G72730 34.667 1.49e-67 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0057 K12823 - gmx:100787545 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0057 11 781419 789463 Amo11g0057 11 781419 789463 ECH
Amo11g0057 11 781419 789463 Amo01g0618 01 8996394 9004604 hybridization