Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0052 ATGTCCGCACAATCCACCCTGAAGCTTCAGACTCTCGCCATAAGAAGCTCAAGCTTCGATTTTGAAGGCGACCCACCATGCAAAACAGCAAAAAGGCTTCGATCGAAGAAGCTCCTTCGAATCATACTCACCGATCCCGACGCCACCGATTCAGAATCTTCCAACGATGAAGCAGAAGAGCAAAACCCATCACCGAGGGTAAAAAGGGAAATTATCACTCACATAATGACCCCTCGGCTTCACTCTTCGCATTCTTCTTCTCCAACCGCATCTTCATCACCTTCTTCTCCTTCAATCGGTTCGGGTCAAAACCATGTTGACCGGAACCGGTTCAAGAGGAAAATAAAACGCACCATTTCTGGCTCTGGAAGGTTCCGTGGCGTTCGTCAGAGACCGTGGGGGCGGTGGACGGCAGAGATTCGTGACCCGAACCGAAGAAAACGGGTTTGGTTGGGCACTTTTGACACGGCGGAGGAGGCTGCCGCTGTTTACGACGCCGCGGCAGTTAAGTTCAAGGGTCCCGGCGCAGCTATTAACTTTCCTCGTGGCGATTCGGAAGTTTCCGGCGAGAGTTTTGCGGTGGTTTCCGGTGAGGGTTTTGTGGCGGTTTCTGGGAGCAGAGGGGGTTTTGCCTCTCCGACTTCGGTCCTTGCTTACGATGACGGCGTTGTTGGTGGTTGCGAGACGACGCCGTTTGAGGGTCTTCGTTACGGCGATGTGGATGCTTTCGGTTTTGACATTGACGTGCCGTTAAGTTTGATGGGCGTTAACTCGGTATTGACTCAGCGGTTTGGGAAGGAAGAGTTCGGCGAGTTAGACCCGGAAGATTTCATGACGTGGCCTGAATAG 849 0.5265 MSAQSTLKLQTLAIRSSSFDFEGDPPCKTAKRLRSKKLLRIILTDPDATDSESSNDEAEEQNPSPRVKREIITHIMTPRLHSSHSSSPTASSSPSSPSIGSGQNHVDRNRFKRKIKRTISGSGRFRGVRQRPWGRWTAEIRDPNRRKRVWLGTFDTAEEAAAVYDAAAVKFKGPGAAINFPRGDSEVSGESFAVVSGEGFVAVSGSRGGFASPTSVLAYDDGVVGGCETTPFEGLRYGDVDAFGFDIDVPLSLMGVNSVLTQRFGKEEFGELDPEDFMTWPE* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0052 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 221 - -
Amo11g0052 282 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Amo11g0052 282 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Amo11g0052 282 CDD AP2 124 181 IPR001471 GO:0003700|GO:0006355
Amo11g0052 282 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Amo11g0052 282 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Amo11g0052 282 MobiDBLite consensus disorder prediction 78 105 - -
Amo11g0052 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 32 221 - -
Amo11g0052 282 MobiDBLite consensus disorder prediction 59 75 - -
Amo11g0052 282 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Amo11g0052 282 MobiDBLite consensus disorder prediction 44 113 - -
Amo11g0052 282 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Amo11g0052 282 PIRSF PTI6 7 282 IPR017392 GO:0003700
Amo11g0052 282 SUPERFAMILY DNA-binding domain 124 181 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0052 Amo-Chr11 716897 718560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0052 35 223 AP2-EREBP Transcription Factor Family AT4G27950 44.279 1.17e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo11g0052 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0052 K13434 - gmx:102660028 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0052 11 716897 718560 Amo11g0052 11 716897 718560 ECH
Amo11g0052 11 716897 718560 Amo01g0621 01 9048666 9050483 hybridization