Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0048 ATGCACACAAGCTGTTTGATATGTTGTTTCAACTGTTATAGTGAGAAACCTGCTTCTAGAAGTTCTCATGAGTTCTTCCTCTGTTGCCATTTTGGTTCCTTTAAGGAAGCTATGAAGTTTGGAAACGTTTACTCTGAATTCAGTTGTCCAGACAGCAAGCAACTCTCCATGAACTTCATTTGTAGATCAGTGACTCCTTTCTTGTTCATCATAGTTTTTCTTTTTCCTCTGACTACTATTGCTGCTGATCTGAGCTCAGACAAGCAAGCTCTTCTTGATTTCGCCAATGCCATTCCTCACCGTCGAAATCTTCAGTGGAATCCTGCATCCTCAGTTTGTACATCTTGGGTAGGCATAACTTGCAATCAAAATAGAACTCGTGTTATTTATGTCCGGCTCCCCGGAGTTGGACTAGTTGGCGCAATTCCGACCAACACACTTGGCAAGCTTGATGCTGTAAAAATCATTAGCCTTCGATCCAACCTACTTGGTGGAAATCTGCCTGCTGACATTGCTTCTCTTCCGTCTCTCGAGTATCTTTATCTGCAGCATAACAACCTTTCCGGTGACATACCTTCCTCATTGTCACCTAAACTCAATGTACTCGATTTATCATATAATGCCTTCACCGGAAGCATTCCAAAGACACTGCAAAATTTGACACAATTAACTAGTTTGAATCTCCAGAACAACTCATTATCTGGAGAGATACCTAATCTAAATGCTACCAGTCTCAGGAACTTGAATTTAAGCTACAACCATTTGAATGGTTCTATCCCTTCAGCTCTTGGGATTTTTCCCAACTCCTCTTTTGAAGGAAACATTCTCTTATGTGGACCACCTTTGAAGCCATGCTCTGGGGTTCCACCGGCAGCTCCACCAGCTGTGACACCGGCTCCACAGCCATCTATTGGAAGCTCAAAGAATAAACTGAGTAAAGTAGCTATCATTGCAATTGCGGTTGGAGGAGGCGTGCTGCTTTCTCTTGTAGCTCTTGTTATTGTCCTTTGCTGTGTAAAGAAGAAAGATGAGGAAGAAGCTCCTGGTGCAGTTAAAGGGAAGGGTTCTATTGGAGGTAGGAGTGAGAAGCCGAAAGAACAGTTTGGTAGTGGAGTGCAAGAACCTGAGAAGAACAAGCTGGTTTTCTTCGAGGGAAGCTCTTACAATTTTGATCTTGAGGATTTGCTAAGAGCTTCGGCCGAAGTTTTGGGAAAGGGTAGCTATGGAACTGCATACAAGGCTATACTAGAGGAGTCGACCACAGTTGTGGTGAAAAGGTTGAAGGAAGTTGTGGTTGGTAAGAAGGACTTTGAGCAGCAGATGGAGATCATTGGAAGGGTTGGACAACACCAAAATGTGGTGCCTCTTCGCGCTTATTATTATTCGAAAGACGAGAAGCTTCTGGTTTATGATTATGTCCCTAGTGGCAACTTATCCTCCCTCTTGCACGGCAACAGGGCAGGTGGAAGAACTCCATTAGATTGGGACACACGTCTTAAAATCGCTCTCGGAACAGCCAGAGGACTAGCTCACCTTCATTCTGTTGGCGGTCCGAAATTTGCACATGGAAACATTAAGTCCTCAAATGTCCTAATCAACCATGATAAAGACGGCTGCATATCTGATTTCGGCCTAGCCCCTCTTATGAATGTGCCTGTAACACCTTCTAGAGCTGTAGGTTACCGTGCACCCGAGGTAGTTGAGACCCGAAAGCACTCTCATAAATCAGATGTGTACAGCTTTGGTGTCCTACTGCTAGAGATGCTTACCGGGAAAGCGCCACTTCAGTCTCCCGGACGCGAGGACATGGTTGATCTGCCTAGGTGGGTCCAATCTGTTGTTAGGGAAGAATGGACTGCCGAGGTTTTCGACGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGCTGCAAATAGCCATGACCTGTGTAGCAAAGATGCCGGATATGCGGCCGAACATGGATGAAGTGATGAAAATGATAGAAGAGGTCCGGCAATCTGACTCGGAAAACCGGCCGTCTTCTGAAGAGTATAAGTCCAAGGACTCAAATGTTCAAACTCCATAA 2079 0.4478 MHTSCLICCFNCYSEKPASRSSHEFFLCCHFGSFKEAMKFGNVYSEFSCPDSKQLSMNFICRSVTPFLFIIVFLFPLTTIAADLSSDKQALLDFANAIPHRRNLQWNPASSVCTSWVGITCNQNRTRVIYVRLPGVGLVGAIPTNTLGKLDAVKIISLRSNLLGGNLPADIASLPSLEYLYLQHNNLSGDIPSSLSPKLNVLDLSYNAFTGSIPKTLQNLTQLTSLNLQNNSLSGEIPNLNATSLRNLNLSYNHLNGSIPSALGIFPNSSFEGNILLCGPPLKPCSGVPPAAPPAVTPAPQPSIGSSKNKLSKVAIIAIAVGGGVLLSLVALVIVLCCVKKKDEEEAPGAVKGKGSIGGRSEKPKEQFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKKDFEQQMEIIGRVGQHQNVVPLRAYYYSKDEKLLVYDYVPSGNLSSLLHGNRAGGRTPLDWDTRLKIALGTARGLAHLHSVGGPKFAHGNIKSSNVLINHDKDGCISDFGLAPLMNVPVTPSRAVGYRAPEVVETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGREDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKMPDMRPNMDEVMKMIEEVRQSDSENRPSSEEYKSKDSNVQTP* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0048 692 Pfam Protein kinase domain 400 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0048 692 Pfam Leucine rich repeat 197 233 IPR001611 GO:0005515
Amo11g0048 692 ProSiteProfiles Protein kinase domain profile. 397 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0048 692 MobiDBLite consensus disorder prediction 666 683 - -
Amo11g0048 692 MobiDBLite consensus disorder prediction 349 372 - -
Amo11g0048 692 Gene3D Ribonuclease Inhibitor 84 240 IPR032675 -
Amo11g0048 692 SUPERFAMILY L domain-like 89 285 - -
Amo11g0048 692 PANTHER LRR RECEPTOR-LIKE KINASE 45 692 - -
Amo11g0048 692 MobiDBLite consensus disorder prediction 666 692 - -
Amo11g0048 692 Pfam Leucine rich repeat N-terminal domain 85 122 IPR013210 -
Amo11g0048 692 PANTHER OS05G0588300 PROTEIN 45 692 - -
Amo11g0048 692 Pfam Leucine Rich Repeat 176 196 IPR001611 GO:0005515
Amo11g0048 692 SUPERFAMILY Protein kinase-like (PK-like) 401 675 IPR011009 -
Amo11g0048 692 Gene3D Ribonuclease Inhibitor 241 286 IPR032675 -
Amo11g0048 692 ProSitePatterns Protein kinases ATP-binding region signature. 403 434 IPR017441 GO:0005524
Amo11g0048 692 Gene3D Phosphorylase Kinase; domain 1 365 472 - -
Amo11g0048 692 Gene3D Transferase(Phosphotransferase) domain 1 473 690 - -
Amo11g0048 692 ProSiteProfiles Leucine-rich repeat profile. 222 244 IPR001611 GO:0005515
Amo11g0048 692 ProSiteProfiles Leucine-rich repeat profile. 176 198 IPR001611 GO:0005515
Amo11g0048 692 CDD STKc_IRAK 403 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0048 Amo-Chr11 679451 683093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0048 70 690 Receptor kinase-like Gene Family AT5G58300 67.666 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo11g0048 Pkinase 2.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0048 - - gmx:100796171 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0048 11 679451 683093 Amo11g0048 11 679451 683093 ECH
Amo11g0048 11 679451 683093 Amo01g0626 01 9099044 9102589 hybridization
Amo11g0048 11 679451 683093 Amo07g1086 07 20725053 20727584 PCT
Amo07g1086 07 20725053 20727584 Amo11g0048 11 679451 683093 PCT