Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0035 ATGAACTCATGCCCATCTAGCTTTATATACTCTTCCTCATCACAGCAAAATACCAGTAATTCAATGGGGATGGTTTATGAAGACATGGCTTCTCTTTCTCTTTGCTCCAACTACACTCTCACCCCCTCCGCAGCCAGCTGGGGCTTCCCCTATGAGGAGCACCCCACTCACAACAGTGATCTTGCGGAGGGTACTACAAAAGGTTCTGATAGCAGCGAAGATAATGGGGTTATTGGAGAAAACAATAACAACAACAACAACCCTAATAATAAAGAGGGAGAGAGTAGTAGCGGACAGTCAAAGCTTTGTGCAAGAGGTCACTGGAGACCAGCAGAAGATTCAAAACTGAAGGAGCTTGTTGCTCTTTATGGCCCTCAGAACTGGAATCTCATAGCTGAAAAGCTAGAAGGAAGATCAGGGAAGAGTTGTAGACTGAGATGGTTCAACCAGCTTGACCCGAGAATAACGAGGAGAGCTTTCAGTGAAGAAGAGGAAGAGAGGCTGATGCAGGCTCATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGTTGTTCCCTGGAAGAACCGATAACGCTGTTAAGAATCATTGGCATGTTATTATGGCTAGAAAGTATAGGGAACAATCCAGTGCTTATAGGAGAAGAAGGCTCACACAATCAAACAACTTTTACAGAAGAATTGACCATAATAATAATCATAATAATAATAATAATGTATCATCAGAATCATCACCACCACCACACTGTTTTGTGGCTGGCTTCTCATCACTACCGTTTCATGGTGGTGTTCTTGACTTTGGTGCCAATAATAAGCCTTATGCTGCTGTTGCTTCCTCTTCTTCTTCCACCTTCAATTTCTTCTCTGGAGGTAGAGGCAATAATAATAGTAGTGAGATGGTAGGAGGAGAGTATTATTATGGAAGTAATCATCATCATCATTATAATCAGCAGCAAGCACATAATAATAATCATGCTTACTACACTCGTTATCCTAATCATCAGTATATGATGATGATGATGCCATCAGTGCAACAGCATCAAAACAACAACCATAACAAGAATTTTTACAGCTTCTCATCAAATTCAAGCACCACAGTAGCACAGGTGCTAGGCAGTGATCCTTCACTATCATCCATGGCAGAACAACAACACAGAGATCATGAAGAAGCCAGTGACCCCCCAACAACAATCCCAGAGCCTCCGTTATTTATTGACTTCCTTGGAGTAGGAGCCACAACATGA 1245 0.4217 MNSCPSSFIYSSSSQQNTSNSMGMVYEDMASLSLCSNYTLTPSAASWGFPYEEHPTHNSDLAEGTTKGSDSSEDNGVIGENNNNNNNPNNKEGESSSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRITRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLTQSNNFYRRIDHNNNHNNNNNVSSESSPPPHCFVAGFSSLPFHGGVLDFGANNKPYAAVASSSSSTFNFFSGGRGNNNSSEMVGGEYYYGSNHHHHYNQQQAHNNNHAYYTRYPNHQYMMMMMPSVQQHQNNNHNKNFYSFSSNSSTTVAQVLGSDPSLSSMAEQQHRDHEEASDPPTTIPEPPLFIDFLGVGATT* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0035 414 MobiDBLite consensus disorder prediction 61 102 - -
Amo11g0035 414 SUPERFAMILY Homeodomain-like 105 198 IPR009057 -
Amo11g0035 414 ProSiteProfiles Myb-like domain profile. 152 202 IPR001005 -
Amo11g0035 414 PANTHER MYB TRANSCRIPTION FACTOR 22 280 - -
Amo11g0035 414 Gene3D - 158 240 - -
Amo11g0035 414 ProSiteProfiles Myb-like domain profile. 105 151 IPR001005 -
Amo11g0035 414 PANTHER MYB TRANSCRIPTION FACTOR 273 413 - -
Amo11g0035 414 MobiDBLite consensus disorder prediction 375 402 - -
Amo11g0035 414 CDD SANT 108 149 IPR001005 -
Amo11g0035 414 Pfam Myb-like DNA-binding domain 157 200 IPR001005 -
Amo11g0035 414 Pfam Myb-like DNA-binding domain 105 151 IPR001005 -
Amo11g0035 414 SMART sant 156 204 IPR001005 -
Amo11g0035 414 SMART sant 104 153 IPR001005 -
Amo11g0035 414 MobiDBLite consensus disorder prediction 55 106 - -
Amo11g0035 414 PANTHER MYB PROTEIN-RELATED 273 413 - -
Amo11g0035 414 PANTHER MYB PROTEIN-RELATED 22 280 - -
Amo11g0035 414 CDD SANT 159 199 IPR001005 -
Amo11g0035 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 206 IPR017930 -
Amo11g0035 414 Gene3D - 105 156 - -
Amo11g0035 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 151 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0035 Amo-Chr11 435792 437451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0035 104 217 MYB Transcription Factor Family AT1G69560 90.351 2.82e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo11g0035 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0035 K09422 - gmx:100804537 354.369