Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0028 ATGTTCGAAGGAGCCCTAGGAGACCCTCAAATCAATTCACTAATCAAGGCTTGCGGAAAGCTGGGCCCAACCAGGTCGATCAACTTCAAGAAGATTCTAAATGCAACATTGGAAGACCTCAGAAACCAAAGCACAAGAAAGAACTACTTTGGCACTTCACATAATGTTATGGGAGATGACACTATATATGGCATGTTCCAATGTAGAAGATACCTTTCTAACACCGATTGCGCCGCCTGCGTCGCCGCTGCCACTGCAGATATCCTTAGTTGCTCCGGTGGGATTAGTTCCCATCTAGTATACGATGGGTGCTCCCTCAGATATGGACCATTCAGCTTCTTCACTGAGGCCATTCGTGGTGTCAATGGTATTCTTTGTGGAAATCAAACTTCAAAGGGAGAAACCAATAAGGATGATTTTAGTGAGGAAGTAAAACAAGTGCTAAACAAGCTACAAATAGCAACACCCAAAATCCCTAATTACTATGCAGCMACAAAGACACAATCAATCTATGCTATTGCACAATGTGTTGAAACTGTTTCAGCAAATAGTTGTCATGMTTGCCTCAACCGTGGATTCAACRRCATACAAGGTGTAGCTCTTATTATTATGGTCTTCTTTGGATTGTATCGTCGTTTATGTGCCGGACTTAATAAGCACCTCGACCATTTATTCGTTAAGAAGCTTAAACTTGATTTTATAGTTTCTTTATTATTTAACTTATTTGCAGGTGAAGTACCAGGAGCAACCAAGTTGAAAGCGCCAATTAACTATAAATACAATGATTTAAAAGCTGCAACAAACAATTTTAATGAAGAAAATAGACTAGGAGGAGGTGGCTTTGGCAATAAATTGTTCTCAGGTCAATCCAAGAAGTTGGAGGATGACTTTGAAAGTGAAGTGAAGTTTCTAAGTAATGTTCATCACCGAAACCTTGTTAGACTCCTTGGATTCTGCAATAAAGGCCAAGAGAGAATAATAGTTTATGAATACATGACAAATGGCAGTCTTGATAAATTGTTATTTGGTAAGGAAAAAGGTTGCCTAAATTGGAAGCAACGTTATGATATGGTTTTAGGCACAGCAAGGGGATTGGCCTATCTACATGAAGAGTTTTATGTTTCAATCATACATAGAGATATCAAAAGTGGCAACATCCTCTTAGACCATGAACTTCAGCCCAAAATTTCTGATTTTGGGTTGGCAAGGTTTCTTCCAAGTGACCAATCCAAACTCAATACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAATATACAATTTACGGCCAATTATCAGAAAAAGTTGATACATACAGCTATGGTATTGTAGTTCTAGAAATTATAAGTGGTCAAAAGAGTACCGAAATAGTGAAAAATAATTATAATGATGATGACGACCATGAATATCTTATCAAACAACAAGGCAAGCACCTGGAGTTAGTGGATAAGAATTTAGACCCTAATGACTATGATGTGGAAGAAGTGAAGAGAGTTATAGAGATTGCTTTAATGTGCACTCAAGCATCACCATCAAAGAGGCCCAAAATGTCTCAAGTAGTAGTCTTACTCACAAGCAAGGCCCAACTTGAGAATTTGCAACCTTCAATGCCTGTATTTATTGAGTCAAACTTGAAATCTCAAGGAAGCAATTTTGGCTCAAATGCTACCGTCTCCTCTGATTCTATTTTATCAGCTAGATGA 1707 0.3837 MFEGALGDPQINSLIKACGKLGPTRSINFKKILNATLEDLRNQSTRKNYFGTSHNVMGDDTIYGMFQCRRYLSNTDCAACVAAATADILSCSGGISSHLVYDGCSLRYGPFSFFTEAIRGVNGILCGNQTSKGETNKDDFSEEVKQVLNKLQIATPKIPNYYAATKTQSIYAIAQCVETVSANSCHXCLNRGFNXIQGVALIIMVFFGLYRRLCAGLNKHLDHLFVKKLKLDFIVSLLFNLFAGEVPGATKLKAPINYKYNDLKAATNNFNEENRLGGGGFGNKLFSGQSKKLEDDFESEVKFLSNVHHRNLVRLLGFCNKGQERIIVYEYMTNGSLDKLLFGKEKGCLNWKQRYDMVLGTARGLAYLHEEFYVSIIHRDIKSGNILLDHELQPKISDFGLARFLPSDQSKLNTRFAGTLGYTAPEYTIYGQLSEKVDTYSYGIVVLEIISGQKSTEIVKNNYNDDDDHEYLIKQQGKHLELVDKNLDPNDYDVEEVKRVIEIALMCTQASPSKRPKMSQVVVLLTSKAQLENLQPSMPVFIESNLKSQGSNFGSNATVSSDSILSAR* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0028 568 Gene3D - 123 200 IPR038408 -
Amo11g0028 568 Gene3D - 12 113 IPR038408 -
Amo11g0028 568 Gene3D Phosphorylase Kinase; domain 1 249 286 - -
Amo11g0028 568 CDD STKc_IRAK 276 526 - -
Amo11g0028 568 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 244 562 - -
Amo11g0028 568 Pfam Protein kinase domain 290 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0028 568 ProSiteProfiles Gnk2-homologous domain profile. 121 223 IPR002902 -
Amo11g0028 568 Pfam Salt stress response/antifungal 126 194 IPR002902 -
Amo11g0028 568 Pfam Salt stress response/antifungal 25 108 IPR002902 -
Amo11g0028 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 376 388 IPR008271 GO:0004672|GO:0006468
Amo11g0028 568 ProSiteProfiles Protein kinase domain profile. 270 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0028 568 Gene3D Phosphorylase Kinase; domain 1 287 331 - -
Amo11g0028 568 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 197 - -
Amo11g0028 568 Gene3D Transferase(Phosphotransferase) domain 1 332 539 - -
Amo11g0028 568 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 244 562 - -
Amo11g0028 568 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 5 197 - -
Amo11g0028 568 ProSiteProfiles Gnk2-homologous domain profile. 11 113 IPR002902 -
Amo11g0028 568 SUPERFAMILY Protein kinase-like (PK-like) 254 525 IPR011009 -
Amo11g0028 568 SMART serkin_6 270 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0028 Amo-Chr11 315227 326881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0028 7 563 Receptor kinase-like Gene Family AT1G70520 33.281 4.69e-95 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo11g0028 Pkinase 8.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0028 - - ahf:112723943 870.152