Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0020 ATGGCTCCCTTCTTATTCGAACCCCAAAGCGACGAAGAGATCGAACACTCCGAAGAAGAAGAAGCATCCGAACCAGAATCAGAACCAGGATCCGAACCGGAAGAATCAGAAGGAGAAGAAGAAGAAGAAGACGAACAAGAAGCTTCTAGAATCTCAAAGGAGAAGAAGAAGAAGAAAACACAGTCTCCGTGGGACTTCGCCAAGTACACTGAGTCAGTTGCGGAGGAGCACGCTCGCCGGAGTACAACCTCCGTTGAYGAAAAAATCTCCAAAGCATTAAAACAGCGCTCAACACCTCTCGCGGTTCCTTCGCAAAACAACGACGTTGACGACTCATCAGATTCCGAACCTGATAAACAGGAAGATTATAGACCAGATGAAGAAGATGAAGAGGAGGGCAATGCGGGTGATAGCAAGTCCTTTTTCGCTCCTTCTGATGGAGCATCTTTCCATGCGGATTCGTTCTTGCAGCTTCATTTGTCACGGCCTTTGCTCAGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACGCCAATTCAGGCAGCTTGTATACCATTGGCGTTGAATGGTCGTGATATATGTGGAAGTGCCATTACTGGGTCAGGAAAGACAGCTGCATTTGCACTTCCCACATTAGAGAGGTTGTTGTTCCGTCCTAAACGCATGCATGCAATAAGGGTCCTTATTCTTACACCAACCAGAGAGTTAGCAGTACAAGTTCACAGTATGATAGAGAAGCTTGCTCAATTTACTGATATTAGATGTTGCCTGGTTGTTGGGGGTTTGTCAACGAAGGTGCAAGAAGCTGCTTTGAGATCAATGCCAGACATTGTYGTTGCTACCCCAGGACGTATGATAGACCATTTACGTAATTCTATGTCAGTGGATTTGGATGATCTTGCTGTGCTAATCCTTGATGAGGCGGATCGTCTTTTAGAGCTTGGATTTAGTGCTGAAATTCATGAACTTGTTCGCATGTGTCCCAAGAAAAGGCAGACAATGCTATTTTCAGCAACAATGACTGAGGAGGTTGATGACCTTATTAARTTGTCCCTAACAAAACCYGTGCGTCTTTCTGCTGATCCATCTGCTAAACGGCCTGCAGCCTTGACTGAGGAGGTGGTTAGGATACGAAGATTGCGTGAAGCAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCTAAAGTTATCATCTTCAGTGGAACAAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGTCTGAAAGCTGCTGARCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACAATTCAGGAAGCAAGAAGTTGACTTTTTGATTGCAACTGATGTGGCTGCYCGTGGCCTTGACATCATAGGTGTTCAAACAGTTATCAACTATGCATGTCCTCGCGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACAGCAAGAGCTGGCCGAGAAGGATGCGCCGTCACATTTGTGACTGATAATGACCGGTCACTTCTAAAAGCAATTGCAAAGAGAGCTGGTTCAAAGCTGAAGAGCCGAATTGTAGCCGAACAATCCATACATAAATGGTCTCATATAATTGAGCAATTGGAGGATCAAATTGCAGAAGTACTTGAAGAAGAGAGGGAAGAAAGAGCCCTAAGAAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACTTGATTGCTCATAAGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTAACAGAGACAGAAAAGAAGGTTGCTGCAAARGCAGCAAAGGCATCTATTAATAACGACAAGAGTTCTGGAAAGGTAATAAGTGCTCAGGAAGCCGAAGACCTCAAAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAAAATTTGCCGAGAAAGAAGCGTAGAAAATTGGAAGCGGCTAGAGAGATGTTGGAAGATGAAGGAGATGATGACAAACCAGAAGCTAAGGGGGCAAATAAGAAAGAAAAGGGTGGACTTTCACTTGTTGATGTCGCTTATCGACGAGCAAAAGCAGTGAAGGCTGTCAAGAAGGCAATGGATTCAGGCAAGATCGTGAAGAAGAACAAAAAGAATACCGATCGTCCTTCACGTAAGTCGTCTTCAAGGACACAGGAGATGCAGGAGCTATTCCAGGCTGACATGAAGGACAAAAAGCCGAAAAGAAGAGGTGCTGGAGCAGGAAAGAAATCTAAGAGTTCGTTCAAGAGCAAGTCAAGGTACAAGCGCAGGTAG 2274 0.4481 MAPFLFEPQSDEEIEHSEEEEASEPESEPGSEPEESEGEEEEEDEQEASRISKEKKKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLAVPSQNNDVDDSSDSEPDKQEDYRPDEEDEEEGNAGDSKSFFAPSDGASFHADSFLQLHLSRPLLRACEALGYAKPTPIQAACIPLALNGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRMCPKKRQTMLFSATMTEEVDDLIKLSLTKPVRLSADPSAKRPAALTEEVVRIRRLREANQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGCAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIHKWSHIIEQLEDQIAEVLEEEREERALRKAEMEATKAENLIAHKEEIFSRPKRTWFVTETEKKVAAKAAKASINNDKSSGKVISAQEAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDEGDDDKPEAKGANKKEKGGLSLVDVAYRRAKAVKAVKKAMDSGKIVKKNKKNTDRPSRKSSSRTQEMQELFQADMKDKKPKRRGAGAGKKSKSSFKSKSRYKRR* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0020 757 Coils Coil 616 636 - -
Amo11g0020 757 Gene3D - 116 360 IPR027417 -
Amo11g0020 757 MobiDBLite consensus disorder prediction 1 143 - -
Amo11g0020 757 SMART helicmild6 408 493 IPR001650 -
Amo11g0020 757 CDD DEADc_DDX27 164 359 - -
Amo11g0020 757 Pfam Helicase conserved C-terminal domain 390 493 IPR001650 -
Amo11g0020 757 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 304 312 IPR000629 -
Amo11g0020 757 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Amo11g0020 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 358 IPR014001 -
Amo11g0020 757 MobiDBLite consensus disorder prediction 599 757 - -
Amo11g0020 757 PANTHER BNAA01G17110D PROTEIN 70 284 - -
Amo11g0020 757 PANTHER BNAA01G17110D PROTEIN 309 715 - -
Amo11g0020 757 SMART ultradead3 172 373 IPR014001 -
Amo11g0020 757 MobiDBLite consensus disorder prediction 683 715 - -
Amo11g0020 757 CDD SF2_C_DEAD 370 502 - -
Amo11g0020 757 Pfam DEAD/DEAH box helicase 177 347 IPR011545 GO:0003676|GO:0005524
Amo11g0020 757 MobiDBLite consensus disorder prediction 48 93 - -
Amo11g0020 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 532 IPR001650 -
Amo11g0020 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 513 IPR027417 -
Amo11g0020 757 MobiDBLite consensus disorder prediction 12 47 - -
Amo11g0020 757 Coils Coil 531 578 - -
Amo11g0020 757 MobiDBLite consensus disorder prediction 735 757 - -
Amo11g0020 757 Gene3D - 374 609 IPR027417 -
Amo11g0020 757 PANTHER RNA HELICASE 70 284 - -
Amo11g0020 757 PANTHER RNA HELICASE 309 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0020 Amo-Chr11 171558 178206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0020 141 510 Eukaryotic Initiation Factors Gene Family AT3G13920 32.976 4.97e-51 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0020 K13181 - gmx:100791233 1049.27