Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0012 ATGCAATATAACTGCAACAACTGCTATTTACGAATCCCAGGCATGAACGACATTAACAACTACTCTTCCTTCGCCGCCGATTCAGGTTCTCTGGACTCAAATCATTCATGCTTGATGGTTGCGGTTGGAAGTGTCGGTGTTGAGTTTGCACCTTCGTCGTCTTCTTCATCATCATCATCTCTTACTCGGTGCCGTAAACCTAGAAAGAAGAGCGCTAAACTGATAAGCATAATGGAAGAAGAAGGAGTGAAAGGTAACAAGAACCGAGACTCGGAGGAGGCGCCGAAGATCACGCGTCCATGCACCCAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTCTATGGCCACATGCGGTGCCACCCTGAGCGGCCGTGGCGAGGCATAAATCCTCCTCGGAACCTCATCCCACCACCACTAGACACGAGCGGCGTCACAGTGGAGGATCAAGAGGTTGCCACGTGTCTCCTGCTGCTAGCGAACAGTGGGAGGGAGACGGTTAAAAATGATGAGTCTAATGAAGTGAAGATAGTGGAATGTGGAGATTCTTATCATTACAAAGAATTTGAGTGCTCCAGTTGCAAGAGAGTGTTTGGATCTCATCAAGCACTGGGAGGGCACAGAGCAAGTCACAAGAACGTCAAGGGCTGCTTTGCCATTACTCGGACCACCACCGAGGATCATCTACTAAACATTAACCTCCTCGCGCATGCTGACCACGGCGACGGCGACGGCGACGGCATCGCCAGCCACCAGTGTAGCATATGCCTCAGGGTGTTCCCCAGTGGCCAGGCTCTTGGTGGACACAAGAGGTGTCATTGGGAGAAAGCTGAGATTGATGAGACTGATGGGTCAACGTCAACACTACTCCCTGTTGACCTCAATTTGCCTGCTCCTATTGATCAACACTACTACCATTGCTCTTCTTCAACACTCACTCTGGATTTGAGGTTGGGTCTTTAA 963 0.5036 MQYNCNNCYLRIPGMNDINNYSSFAADSGSLDSNHSCLMVAVGSVGVEFAPSSSSSSSSSLTRCRKPRKKSAKLISIMEEEGVKGNKNRDSEEAPKITRPCTQCGKKFWSWKALYGHMRCHPERPWRGINPPRNLIPPPLDTSGVTVEDQEVATCLLLLANSGRETVKNDESNEVKIVECGDSYHYKEFECSSCKRVFGSHQALGGHRASHKNVKGCFAITRTTTEDHLLNINLLAHADHGDGDGDGIASHQCSICLRVFPSGQALGGHKRCHWEKAEIDETDGSTSTLLPVDLNLPAPIDQHYYHCSSSTLTLDLRLGL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0012 320 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Amo11g0012 320 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Amo11g0012 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 278 IPR013087 -
Amo11g0012 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Amo11g0012 320 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 51 320 - -
Amo11g0012 320 Pfam C2H2-type zinc finger 251 275 - -
Amo11g0012 320 Pfam C2H2-type zinc finger 100 123 - -
Amo11g0012 320 Pfam C2H2-type zinc finger 189 212 - -
Amo11g0012 320 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 51 320 - -
Amo11g0012 320 MobiDBLite consensus disorder prediction 50 70 - -
Amo11g0012 320 SUPERFAMILY beta-beta-alpha zinc fingers 100 211 IPR036236 -
Amo11g0012 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 121 IPR013087 -
Amo11g0012 320 ProSitePatterns Zinc finger C2H2 type domain signature. 253 273 IPR013087 -
Amo11g0012 320 SMART c2h2final6 189 211 IPR013087 -
Amo11g0012 320 SMART c2h2final6 251 273 IPR013087 -
Amo11g0012 320 SMART c2h2final6 99 121 IPR013087 -
Amo11g0012 320 Gene3D Classic Zinc Finger 186 273 - -
Amo11g0012 320 Gene3D Classic Zinc Finger 48 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0012 Amo-Chr11 92566 93528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0012 94 320 C2H2 Transcription Factor Family AT4G35280 50.628 2.17e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo11g0012 zf-C2H2_6 6.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0012 - - aip:107643999 636.721