Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3458 ATGGAGGACAAAGACGAGGACAGTAATAACAACAAAAGTAACAACCAACATCATCATAACCACCCAAAAGAAGAGCCACTAATAACAAGAAAACACAATACTATTGGAGGTGGTAGCGGCAGCGGTAGCGGCGGCGACAGATTAAAGAGAGACGAGTGGAGTGAAGGAGCGGTTTCCACCCTTCTAGAAGCATACGAATCAAAATGGGTTCTTAGAAACAGAGCAAAGCTCAAAGGCCATGACTGGGAAGAYGTTGCAAGACACGTGTCATCAAGAGCCAACTCTACAAAATCGCCCAAGACACAAACGCAGTGCAAGAACAAGATCGAGTCYATGAAGAAACGCTACAGATCAGAGTCTGCTACCGCTGATGCTTCATCTTGGCCGTTATATTCACGCCTTGATCTTCTCTTGCGTGGGACGGGGCCTGTGCCCACGTCTTCCACACTCGCAGCTTCGCCACTGCCACTCTCACCAACACTGCAGGCAGTGCCAGTGACGGTGACAGTAGCTGCTGCTGCAGCAACTGGTTCTCATCAGTCGCTGCACTTTAGCAATAACCAACAACCTTTGATGTTGTTGGAGCAGCCGCCGTCGTCACAAGTTCTCCATCAACCACCGCTACCTCCTGGTGCTGCTGCTCCTCCACCTCCTGCCACCACTGCGCAAAACTCGCATGGATCCAATGGCGTTGAGAGAGTAATAACCAAGGAAGATGGGTTGTTAGGAACTAAGTCATGTGAGCATGTATCTAACAAGAATGAAGTAGACACTGATAGCAGCACACCAGCACTGTATAGTGAAAAGGATAAGCTTAGATGCAACAAGAGGAAGATGAAGATGGAGAGCAACAAGCAGCGGCGGCGAAAGGAGGAGATGGAGATAGCAGGAAGCATAAGGTGGCTTGCAGAAGTTGTGGTGAGATCGGAGCAAGCAAGAATGGACACAATGAAGGAGATTGAAAAGATGAGAGTCGAAGCTGAGGCCAAGCGCGGCGAAATGGATCTCAAGAGAACTGAAATCATTGCCAATACGCAGTTAGAGATTGCTAGAATCTTCGCAAGTGTTAATAACAAAGGTGTGGATTCATCGCTCAGAATTGGCAGAAGTTAA 1113 0.4816 MEDKDEDSNNNKSNNQHHHNHPKEEPLITRKHNTIGGGSGSGSGGDRLKRDEWSEGAVSTLLEAYESKWVLRNRAKLKGHDWEDVARHVSSRANSTKSPKTQTQCKNKIESMKKRYRSESATADASSWPLYSRLDLLLRGTGPVPTSSTLAASPLPLSPTLQAVPVTVTVAAAAATGSHQSLHFSNNQQPLMLLEQPPSSQVLHQPPLPPGAAAPPPPATTAQNSHGSNGVERVITKEDGLLGTKSCEHVSNKNEVDTDSSTPALYSEKDKLRCNKRKMKMESNKQRRRKEEMEIAGSIRWLAEVVVRSEQARMDTMKEIEKMRVEAEAKRGEMDLKRTEIIANTQLEIARIFASVNNKGVDSSLRIGRS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3458 370 Coils Coil 276 296 - -
Amo10g3458 370 MobiDBLite consensus disorder prediction 1 51 - -
Amo10g3458 370 MobiDBLite consensus disorder prediction 1 30 - -
Amo10g3458 370 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 29 366 - -
Amo10g3458 370 Gene3D - 53 118 - -
Amo10g3458 370 MobiDBLite consensus disorder prediction 198 229 - -
Amo10g3458 370 MobiDBLite consensus disorder prediction 202 217 - -
Amo10g3458 370 Pfam Myb/SANT-like DNA-binding domain 50 136 IPR044822 -
Amo10g3458 370 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 29 366 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3458 Amo-Chr10 100361065 100364965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3458 36 352 Trihelix Transcription Factor Family AT3G14180 24.432 1.10e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo10g3458 Myb_DNA-bind_4 9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3458 - - adu:107471869 634.409