Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3442 ATGAAGGAGGAAACAGAAAAAACAAAAATGTCCGCGGGCGATTCCTTCGCGAACCATAAGCTATGCGGTTTCCTCTGTGCCGTTCTCAGAGTCACTCCTCCAATTCGATCTGAAGGATATAGTTCCACTTCTTCGTTCAACGACCAATGCGAGATCTTCGGCGACGGTTTCCGGTCCCGGAATGGCGTCGTTTTGTGTCCGTTGGGGACTGGTTCGGATTCAGGACAATGCGAAGGAGGAGAGAGTAGTAGCAGTGGTGGTAGCGGCGGATCCTCTTCGAAAGGGAGGAGGATGAGTAAGGTTGGGATGGTGAATGGGAGCATTAGCGTGGTTCACCAGCTTCACGCTCTGGTGAGCCGCAACTGCATCACGAGTGATGCTCGAGTGGTGTGGGTGGAGGTCGGAGAAGGGAAGGAGGTGAGGGCGGTGGTGCTCATCGATGTCTACCTCACAATTGAGCTCTGGAGTGGCTGGCAGTTCCCGCGGTCGGGGCCGGTTGCCGGCGCTTTCTTTAGCCACCTGAGCTGTGATTGGGACAAGAGAAGTTCAATACTTTCTGATCCAGACTATTTTATGAAGACTTTTGGGACAAGCGACAACATCTGGAACCTTTCTGACTGTCATGTACTTGGTTGCAAGCTCCATTATGGTGCAAGTGATTCTTCAAAGAAAAGACTATTTGAACTTCATGAAATATTTAAGATGGTACCTGGTGTTGGAAAACAGCAGAAATCTAACAATTCAAGGATAGCACCTATTGATAATGCTTTCGGATCTGGGATTTGGGAGATATCTGATGATATTTTAACCAAAATTTTAGCTTGCCTTGGTCCAATGGACCTCACTAGGGTATCTGCAACGTGTCGACATCTCAGATCCTTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTCTTTCCTCATCAGCAGACTGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATTTTGAACAGTTGCTACATCCCTTATATATTGCTCTCTTAACTGAAGATGGCTTTAGTTTCCACGTGAATACTGTATCTGGGGAAATAATTTCTGAGGAAACTCCCACCATCAGAGATTTTCGCGGAGGGATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAACACTTTCTCTTATTGTGAAGACACAAGGTACTCTGGCAGATCCACCAGACGGGGCAGAAGTAATCTGGTGTCAACATAATGGTAACCAGAAATGTGGTTATTATGAGATCAGTGGTAATAATATAACTGGTTTTTGTGTGTTGGGTAAGAGGGATGTGGCCCAAGATACTAGTAAGAATAATGAGAACCATGACTACTCCTCAAAAAGAGCCAGATTGATGAATCCTGCTGGGAAAATTACTACACAAAATGACGTAATTTCTGCAGAAGCTATGAAATCGCCTGTAGATGCATCCTTTGAAGAATCGGTGCCTGCCAGTCGAAGCACTAGGAGTCTCAGTTGCGTCAAGAAAAAACTGAATCTCTCCTTTGAAGATGAAGACTTGATTTTCAAGGAAAGAAGAGTTGGTATGAGATCACATAAAAGAAATCACGAATCAGATATTGCATCATGTGTACCACCAAATAAACTAGTTAATGCTTCATATGGACGTGGGAAAAGTTCCAAGTTGCGTGGGAATCCTAAAGTTGATTGTTTGGAGTCCAAGGATACATGGATTCAGTGCGATGCATGTCACAAATGGCGAAAGGTTGCAGATAATATTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTCATATCAGAGTTGTAGTGTCCCAGAACAACATTTCCAGAATAGCTGTAAGATAACATACTTGCCAGGATTTCACTTGAAAGGAACTCTTGGGGGTTTGGAACAAAATATTTCCTTTTTCATTAGTGTTCTTAAGGAGCACTGTACATTGCTGAATTCTCAATCAAAGAAGGCTCTGACTTGGTTGGTTAAACTTTCAGCAGATCAGATTGCAGGAATGGAAACACATGGCATACGGGGGCCCATTTTGAACTCCTGTAGTACATCTAATGGATATTTTAATGCATTCCACAAAATATTTCAAGCATTTGGCCTTGTAAAGAGAGTAGAGAAAGGTATATGCAAGTGGTACTACCCACAAAATCTTAGCAATTTGACTTTTGATGTGAAAGCACTTGGCATGGCTCTACGTGAGCCATTAGATTTTGTGAGGCTGTACTTGTCAAGAGCAACCCTCATAGTTGTTCCAGCAAATCTGGTTGATCATTGGAAAACACAAATAGAGAAGCATGTAACTCCTGGTCAATTGCGGGTGTATGTTTGCGTTGATCAGCGGAAGCCATCTGCACACTGTTTAGCTTGGGATTATGATGTTGTTATAACTACCTTTAGCCGTTTAAGTGCAGAGTGGAACCCACGTAAGAGGAGTGTTTTGATGCAAGTACATTGGTTTAGGATAATTTTAGATGAAGGTCACACTCTTGGCTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCAATGATGGCTTCAAATCGTTGGATACTAACAGGTACTCCAACACCTAACACCCCTAACAGCCAACTCCCACATCTACAACCTCTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCAGAAGTCGTGGGAAGCTGGCATCCTTAGGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTCGCGCCTGTTGCATTTAATTCAGAAGTGCATGATTAGTGCAAGAAAGGTAGACTTGCAAAACATTCCGCCATGCATTAAGAAAGTTGTTTATGTGGATTTCAGTGAGGAACATGCTAGAAGTTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGACCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAATGGAAATTTCGAAGTGCAACCATAAAGAATGTGAGGCTCTCTTGCTGTGTTGCTGGGCATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAACAATGGATATTTTAGCACAAAGTGGTCTTGATGCTACTTCAGCAGAGTATAGCTCCATAAGATATAGTCTCCTATTTGGTGGTAATTGTGTCAGATGCAAGGAGTGGTGCCGCCTTCCTCTCATTACACCTTGTCGCCATCTATTGTGCCTTGATTGTGTTTCTTTAGACAATATGAAGTGTACATACCCTGGATGTGGTAAAGCATACGAAATGGAGAGTCCTGATTCATTGGCCCGACCAGAAAATCCTAACCCAAAGTGGCCTGTGCCCAAAGATCTTATTGAGTTGCAGCCTTCGTATAAGCAGGATGATTGGGATCCTGATTGGCAATCAACTTCTAGTAGTAAAGTCTCCTATCTTGTCCAGAGGTTAAAAGCTTTGCAAGAAATCAATGAAGAGATGGGTTTCTGCAAAGCCAAGAGCAATCATGAGCTTGATACTGAGAATAGCTCCCCTATGCATATGAGAGATGGTGGATCATTATTCCAGGAATGTTCTATAAGAAGCACTATGACCAATATGAAACCTGACAAAGTTTTGATATTTTCCCAGTTTCTGGAGCATATACATGTCATTGAACAGCAGTTGACCATTGCTGGTATCAAATATGCTGGAATGTATAGCCCAATGCATTCAAGCAGCAAGAAGAAGTCATTAGCCACATTCCAGCATGATTCAAGTTGTATGGCACTTGTGATGGATGGAAGCGCTGCATTGGGGCTTGACCTGAGTTTCGTTACGCATGTATTTTTGATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGCCGTGCCCATCGCATGGGTGCTTCTCGTCCTATTCATGTGGAAACCTTGGCAATGCGTGGTACCATTGAAGAACAAATGGTGGAGTATTTACAGGATGCTGATAAATGTAGAAGATTTCCTAGTCAAGATACTCCCAAATCTGTAGATGATAGTGGGGGACGAGGACACCGTTCATTACATGATTTTGCTGAAAGTAGTTATCTACTCAAACTTAGATTTGTATATACTAATCCAGAAACCCTAAAAGGTGTATGA 4086 0.428 MKEETEKTKMSAGDSFANHKLCGFLCAVLRVTPPIRSEGYSSTSSFNDQCEIFGDGFRSRNGVVLCPLGTGSDSGQCEGGESSSSGGSGGSSSKGRRMSKVGMVNGSISVVHQLHALVSRNCITSDARVVWVEVGEGKEVRAVVLIDVYLTIELWSGWQFPRSGPVAGAFFSHLSCDWDKRSSILSDPDYFMKTFGTSDNIWNLSDCHVLGCKLHYGASDSSKKRLFELHEIFKMVPGVGKQQKSNNSRIAPIDNAFGSGIWEISDDILTKILACLGPMDLTRVSATCRHLRSLAASVMPCTKLNLFPHQQTAVEWMLHRERNFEQLLHPLYIALLTEDGFSFHVNTVSGEIISEETPTIRDFRGGMFCDEPGLGKTVTTLSLIVKTQGTLADPPDGAEVIWCQHNGNQKCGYYEISGNNITGFCVLGKRDVAQDTSKNNENHDYSSKRARLMNPAGKITTQNDVISAEAMKSPVDASFEESVPASRSTRSLSCVKKKLNLSFEDEDLIFKERRVGMRSHKRNHESDIASCVPPNKLVNASYGRGKSSKLRGNPKVDCLESKDTWIQCDACHKWRKVADNIMANSSAAWFCSMNTDPSYQSCSVPEQHFQNSCKITYLPGFHLKGTLGGLEQNISFFISVLKEHCTLLNSQSKKALTWLVKLSADQIAGMETHGIRGPILNSCSTSNGYFNAFHKIFQAFGLVKRVEKGICKWYYPQNLSNLTFDVKALGMALREPLDFVRLYLSRATLIVVPANLVDHWKTQIEKHVTPGQLRVYVCVDQRKPSAHCLAWDYDVVITTFSRLSAEWNPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISMMASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEEAYGLNQKSWEAGILRPFEAEMEEGRSRLLHLIQKCMISARKVDLQNIPPCIKKVVYVDFSEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDILAQSGLDATSAEYSSIRYSLLFGGNCVRCKEWCRLPLITPCRHLLCLDCVSLDNMKCTYPGCGKAYEMESPDSLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVSYLVQRLKALQEINEEMGFCKAKSNHELDTENSSPMHMRDGGSLFQECSIRSTMTNMKPDKVLIFSQFLEHIHVIEQQLTIAGIKYAGMYSPMHSSSKKKSLATFQHDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMVEYLQDADKCRRFPSQDTPKSVDDSGGRGHRSLHDFAESSYLLKLRFVYTNPETLKGV* 1362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3442 1361 Pfam CW-type Zinc Finger 564 607 IPR011124 GO:0008270
Amo10g3442 1361 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1177 1329 IPR001650 -
Amo10g3442 1361 MobiDBLite consensus disorder prediction 75 95 - -
Amo10g3442 1361 Pfam F-box domain 264 298 IPR001810 GO:0005515
Amo10g3442 1361 SMART helicmild6 1201 1283 IPR001650 -
Amo10g3442 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 819 1317 IPR027417 -
Amo10g3442 1361 Gene3D - 1100 1323 IPR027417 -
Amo10g3442 1361 Gene3D - 731 921 IPR038718 -
Amo10g3442 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 387 IPR027417 -
Amo10g3442 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 917 IPR027417 -
Amo10g3442 1361 ProSitePatterns Zinc finger RING-type signature. 1055 1064 IPR017907 -
Amo10g3442 1361 ProSiteProfiles Zinc finger CW-type profile. 559 610 IPR011124 GO:0008270
Amo10g3442 1361 SMART ultradead3 302 888 IPR014001 -
Amo10g3442 1361 Gene3D - 559 613 - -
Amo10g3442 1361 SUPERFAMILY F-box domain 260 297 IPR036047 GO:0005515
Amo10g3442 1361 CDD DEXDc_SHPRH-like 741 918 - -
Amo10g3442 1361 CDD SF2_C_SNF 1186 1293 - -
Amo10g3442 1361 MobiDBLite consensus disorder prediction 73 98 - -
Amo10g3442 1361 PANTHER OS01G0952200 PROTEIN 93 1342 - -
Amo10g3442 1361 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 93 1342 - -
Amo10g3442 1361 SMART fbox_2 264 304 IPR001810 GO:0005515
Amo10g3442 1361 Pfam Helicase conserved C-terminal domain 1184 1283 IPR001650 -
Amo10g3442 1361 Pfam SNF2-related domain 309 975 IPR000330 GO:0005524|GO:0140658
Amo10g3442 1361 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 748 877 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3442 Amo-Chr10 99925270 99932435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3442 747 1303 RAD5 or RAD16-like Gene Family AT5G22750 25.758 1.20e-42 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo10g3442 SNF2_N 2.9e-97 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3442 - - adu:107471940 2735.29