LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo10g3432	ATGGCTGTACGGCAGGGAAATTCTGAAGGTAACGGTGTCTCAGGGTCAACAGGAGCTTGCCTTTTTGATCTCTTCTGCTCTGAAACACCAAGTTTGAATTCCCAAAGTCAAAGAAGCCAATGGCTACCTCATGTAACTCCACAAGAAAGGCTCGACAATCTGATGCGTCAAGCGGGGAACAGGTTCTGTGCCGATTGCGGATCATCAGATCCAAAATGGGCGTCTTCAAGTCTTGGAGTATTTATTTGCATCCAATGTTCTGGCATACATAGAAGCCTAGGAGTCCATATATCGAAGGTTCTATCGCTGAAACTAGATGACTGGACAGACGAACAAGTTGATGAATTGGTGAAATTGGGTGGAAATACAGTAATCAATAAGAGGTATGAAGCTTGTGTCCCAAGTAACATTAAAAAACCAAAACCGCATTCTTCCATCGAAGAGCGTGCAGATTATATCAGAAGAAAATACGAGCTTCTACAGTTTTTGGATACGGAGAAAAATTTGCAATGCTCCTTTCCGCCATCTCCACAAAGATATTTAACATGCTCCCCAAGCAACGCTGCTTCCTGTGGGTTTCAAATGGACAAAAGACATTACGAAAAGCAAACAACTAAAGCTCGTATTGGGACTGCACTCCGACACAGCTGGGGAAGAAAGGAATCTGAGCATAAGATTTCAAAGAAGAGTACTTCATTGGCAGGTATGGTTCAATTTGTTGGGTTGATCAAGGTTAATGTCGTTAAAGGAACTAACCTGGCTGTCCGGGATGTTGTGACTAGTGACCCTTATGTCATGCTTTCTCTTGGTCACCAATCGGTGAAGACTCGTGTCATAAAGAACAACTTGAATCCAGTTTGGAATGAAAGCTTAATGCTCTCGATTCCAGAGCATGTTCCTCCTCTTAAAGTGGTTGTGTATGACAAGGATACTTTCTCGACCGATGATTTTATGGGCGAGGCTGAAATAGACATTCAACCTCTAGTAACTGCCGCAAAGGCATACGAGAAATCTTCGATCAACGAGTCAATGCAGCTCGGAAAATGGGTAGCAAGCGGCGAAAACACTCTTGTTAAAGATGGTATCATCACCCTAGAAGAAGGGAAGGTCAAACAAGAGATACAGTTGAGGTTACAGAAAGTTGAGCGAGGAGTTTTAGACATTGAGCTTGAATGTCTTCCTCTCACTCAATAG	1194	0.4305	MAVRQGNSEGNGVSGSTGACLFDLFCSETPSLNSQSQRSQWLPHVTPQERLDNLMRQAGNRFCADCGSSDPKWASSSLGVFICIQCSGIHRSLGVHISKVLSLKLDDWTDEQVDELVKLGGNTVINKRYEACVPSNIKKPKPHSSIEERADYIRRKYELLQFLDTEKNLQCSFPPSPQRYLTCSPSNAASCGFQMDKRHYEKQTTKARIGTALRHSWGRKESEHKISKKSTSLAGMVQFVGLIKVNVVKGTNLAVRDVVTSDPYVMLSLGHQSVKTRVIKNNLNPVWNESLMLSIPEHVPPLKVVVYDKDTFSTDDFMGEAEIDIQPLVTAAKAYEKSSINESMQLGKWVASGENTLVKDGIITLEEGKVKQEIQLRLQKVERGVLDIELECLPLTQ*	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo10g3432	397	PANTHER	CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN	1	397	-	-
	Amo10g3432	397	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	237	332	IPR035892	-
	Amo10g3432	397	SMART	arf_gap_3	49	170	IPR001164	GO:0005096
	Amo10g3432	397	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	20	-	-
	Amo10g3432	397	Gene3D	C2 domain	239	388	IPR035892	-
	Amo10g3432	397	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	48	170	IPR001164	GO:0005096
	Amo10g3432	397	SUPERFAMILY	ArfGap/RecO-like zinc finger	48	163	IPR037278	-
	Amo10g3432	397	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	1	397	IPR044518	GO:0005096\|GO:0005543
	Amo10g3432	397	CDD	C2_ArfGAP	240	384	-	-
	Amo10g3432	397	ProSiteProfiles	C2 domain profile.	220	339	IPR000008	-
	Amo10g3432	397	SMART	C2_3c	242	337	IPR000008	-
	Amo10g3432	397	PRINTS	HIV Rev interacting protein signature	60	79	IPR001164	GO:0005096
	Amo10g3432	397	PRINTS	HIV Rev interacting protein signature	79	96	IPR001164	GO:0005096
	Amo10g3432	397	PRINTS	HIV Rev interacting protein signature	100	121	IPR001164	GO:0005096
	Amo10g3432	397	Pfam	C2 domain	242	331	IPR000008	-
	Amo10g3432	397	Pfam	Putative GTPase activating protein for Arf	49	163	IPR001164	GO:0005096
	Amo10g3432	397	Gene3D	Arf GTPase activating protein	31	171	IPR038508	-
	Amo10g3432	397	CDD	ArfGap	51	157	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo10g3432	Amo-Chr10	99873417	99877867	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo10g3432	48	397	C2H2 Transcription Factor Family	AT4G05330	46.571	4.34e-115	337

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo10g3432	K12486		-	gmx:100799376	622.854