Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3405 ATGGATAATTTGGGGATGATGAATATGCAAGGTAACTCGTTCCTCACCTCGGATTACGGTGACAACAGGTTCCGGAAACTGGTGCTCGATGACGATGGGAATCTAAAGATCTATAGCTTCTATCCTGAAGAGAAGAATCAGTGGAAGGTTGTGTGGAGAGCCATATGGGAAATGTGCAGAGTCAAAGGAAGGTGCGGTTCTTATGCTATTTGCGTACCAAGCGATGATTTGAACGTGACTACCACTTCTTGTTTTTGCCCCACCGGGTTCACCGCAAACAACGGTGTTCCCGATCGTGGCTGCACACGGAAGAAACCACTCTCCAAGAACACCGGCTTCATCAGGCTCGATTACGTGAACTACACCGTCTCCGGCGACGGCAGCACCATGAACCAGTTAAGCGGCTCCCAGAATTTCTCTGTCTGCGAAGCCACCTGCAAAACAAACCCCAACTGCTTGGGATTCGGATTCAAGTACGACGGATCGGGTTTCTGCGTTCCGTTAATCGGTAAAGAGCTTCAATACGGTTACTGGTCACCGGGCACCGAGACCGCGTTGTTCATCAAAGTAGATGAATCAGAATCAGAAGAAAGCTCCAATTTCATTGGGCTGACTGAGGTTATGCAAACGAGTTGTCCGGTGAGGATAAGCCTGCCGCAGCCACCGAAGGACTCGAACGCCACCACGAGGAACATCATCATAATCTGCACGCTATTTGCGGCAGAGCTTATTTCTGGTGTGGCTTTCTTCTGGTCTTTCTTAAAGAGATACATCAAATACAGGGACATGGCCACTACTTTAGGCCTTGAACTCTTACCTGCTGGTGGCCCCAAAAGGTTCACTTACTCTGAGCTCAAGGCCGCAACCAATGATTTTTCCAACCTCATTGGAAGAGGTGGATTTGGGGCGGTTTACAGAGGCGAGTTGCCAGACCACCGCGTTGTCGCTGTCAAGGTCTTGAAAAACGTTTCAGGTGGCGATGCGGAGTTCTGGGCCGAGGTGACCATCATTGCCAGAATGCACCACCTCAATTTGGTTCGACTATGGGGATTCTGTGCAGAGAAAGGACAAAGAATTCTCGTGTACGAGTACATCCCTGGTGGCTCATTGGACAAGTACCTCTTCAGGTTGAACAATTCTAAAAAAGGCGACTCAAATACACAGCAAGAGAAGCCTATTTTAGATTGGAATATGAGGTATAGAATTGCTCTTGGTGTAGCCAGAGCTATTGCATATTTGCATGAAGAGTGTTTGGAATGGGTTCTACACTGCGACATCAAACCCGAAAATATTCTTCTAGGCGATGACTTTTGTCCTAAGATATCGGATTTTGGACTCGCTAAGTTAAGGAAAAAAGAGGATATGGTAACAATGTCCAAGAGGAGGGGTACTCCGGGATACATGGCTCCTGAATGGATTACTGCGGATCCAATAACATCAAAGGCTGATGTATATAGTTTTGGAATGGTGTTGTTGGAGCTTGTGAGTGGAGTTAGAAACTTTGAGAGTCCTGAGTCTATGGTTAGAAGTGATGAGTGGTACTTTCCAGGTTGGGCTTTCGATAAGATGTTCAAGGAAATGAGGGTTGAGGACATTCTTGATGGTCATATTAGGGAAATGTATGATACAAGGGCCCATTTTGAAATGGTTAATAGGATGGTGAAGACTGCTATGTGGTGCCTTCAGGATAGGCCTGAGTTGAGGCCTACAATGGGGAAAGTGGCTAAGATGTTGGAAGGAACTGTGGAGATTACTGATCCCAAGAAGCCCACCGTGTTCTTCCTTGGGGAAGAGTAG 1797 0.4702 MDNLGMMNMQGNSFLTSDYGDNRFRKLVLDDDGNLKIYSFYPEEKNQWKVVWRAIWEMCRVKGRCGSYAICVPSDDLNVTTTSCFCPTGFTANNGVPDRGCTRKKPLSKNTGFIRLDYVNYTVSGDGSTMNQLSGSQNFSVCEATCKTNPNCLGFGFKYDGSGFCVPLIGKELQYGYWSPGTETALFIKVDESESEESSNFIGLTEVMQTSCPVRISLPQPPKDSNATTRNIIIICTLFAAELISGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSELKAATNDFSNLIGRGGFGAVYRGELPDHRVVAVKVLKNVSGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYIPGGSLDKYLFRLNNSKKGDSNTQQEKPILDWNMRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKEDMVTMSKRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGVRNFESPESMVRSDEWYFPGWAFDKMFKEMRVEDILDGHIREMYDTRAHFEMVNRMVKTAMWCLQDRPELRPTMGKVAKMLEGTVEITDPKKPTVFFLGEE* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3405 598 Pfam S-locus glycoprotein domain 15 93 IPR000858 GO:0048544
Amo10g3405 598 Gene3D Phosphorylase Kinase; domain 1 264 364 - -
Amo10g3405 598 PANTHER OS07G0415500 PROTEIN 2 598 - -
Amo10g3405 598 SUPERFAMILY Protein kinase-like (PK-like) 272 579 IPR011009 -
Amo10g3405 598 PANTHER OS10G0101000 PROTEIN 2 598 - -
Amo10g3405 598 Gene3D Transferase(Phosphotransferase) domain 1 365 590 - -
Amo10g3405 598 Pfam Protein kinase domain 294 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g3405 598 ProSiteProfiles Protein kinase domain profile. 290 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g3405 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Amo10g3405 598 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Amo10g3405 598 CDD STKc_IRAK 296 580 - -
Amo10g3405 598 SMART serkin_6 290 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3405 Amo-Chr10 99664259 99667738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3405 142 590 Receptor kinase-like Gene Family AT4G18250 34.261 6.85e-79 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo10g3405 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3405 - - ahf:112783437 1224.92