Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3404 ATGGGTTCGGATGAGCGGTTCGTGGTTCTTGTAGGTGTAGTTCTTGTTTTATCATTGATGCCGTTTTCTATGTCAGACGATGCGGCTGTCATGAAGGCTCTGAGGGGTTCGATAACGTCACCCGGTCTGAACTGGACGAGTGCTGACGTGTGCAGTTGGAGTAACGTACGTTGCGATAACGGTCCGGGGAGAGTAACCGCCATACAAATCGCAAACCTCAACCTGGCGGGCACTCTTCCCAAGGATCTCGGGCAGCTCGGTCAGCTTCAGCATTTCGACTGCAGAGCGAACAACTTCACCGGTGCATTTCCTCACTTGGCTACCACCCTGCAGACGCTGAATATCAACAACAACGGATTCACGTCGTTCCCTGAAGATTTCTTTGAAGGCATGAGTAGCTTGCAAGTTGTTAGCATCGGTTCTAATTCTTTCTCGCAGTGGAAAGTTCCAGAAAGTCTCAAAGACTGTGTTTCGTTGACGAGCTTCTCCGCGATCGGCGCCAACTTTTCCGGCAAGATTCCTGAATTCTTCGGGAGCAGTGGTCCGTTCGGCAGTTTGCAGAATCTTTCTTTGAGTTTCAATAACTTCGACGGCGGTTTGCCTGATTCGTTTTCCGGAAGCGGAATACAGAATCTGTGGGTGAATGTTCTTCCAGGTAACAACAAACTCAGCGGAACTCTTTCAGTTTTACAGAATATGACTTCGCTTAGGCAAATTTGGGTTCATGGAAACAATTTCACTGGTCCTATACCTGATTTTTCGAACCATGATTCTCTTTATGATGTGAGTTTGAGGGATAATAAGCTAACAGGTGTAGTACCGGAATCTCTTGTTAATCTTCCATCGCTTAAGGTAGTTAATTTGACTAATAATCGTCTTCAAGGTCCTCCTCCCAAGTTTAGGGACGGGGTTAGGGTTGATGATGTCATTAATCAGGGGAATCAGTTCTGCACCAACGTGATAGGTGGGAAGTGTAGTGAAATTGTTGATATTTTGCTGAAAGTGGTTGAGCCTTTGGGTTATCCTCTAATGCTTGCTGAGAGTTGGAGTGGCAATGATCCTTGTGGTGGTAATGGCTGGATGGGGATTGATTGTGACGGTGGAATTGTTAGGGGGATAAATTTTCAAAACAAGGGCTTCTCTGGGACTATATCTCCTAGTTTTGCCAAGCTTACTAATGTGACAAGGTTGCTTCTTAATAATAACCGTCTCACTGGTACCATACCTGAGGAACTTACCACTATGCCTAATTTGATGGTGCTGGATGTCTCCAATAACCAATTGTATGGAAAGGTTCCGAAGTTTCGCGAAGGCGTGAAGGTTAACACCAGTGGGAATCCTGATATTGGAAAGGATAAGCCAAGTGGAGGAGGTGGTAGTTCTTCGGGAGGTATAAGTGGTCATACTGGAGTCATTGTTGGTGTTGTGGTGGGGATTCTTGTTTTACTTGTTGCTGGGATATTGCTGTATAAGTATTGTGGGAAGAATAAGGGTGGTGGTAAAGCTCAACCACCAAATGCTATCGTCGTACATCCTCGCCGTTCCGGAGAAGGAGATGCTCTGAAGATAAGTGTTGCGGATGCTACTGCTGCTGCTGCTGCTGCTTCGGCTTCTGCCAGTAGTCCAAAAAGTGATGTTCATCATGTGGAAGCAAGCAATTTTGTAATCTCCATTCAAGTCTTGAGACAAGTGACGAACAATTTTAGCCAAGAGAATATATTGGGGAAAGGTGGTTTTGGCACTGTGTACAAAGGGGAGTTACCTGATGGAACCCAGATAGCGGTGAAGAGAATGGAGTCTGGAGTGGTGGGTGAGGGAGAGAAGGGGCTAACCGAATTCAATTCAGAAATTGCGGTGCTTACTAAGGTTAGACACAGGCATTTGGTAGAACTCATTGGCCATTGCTTGGACGGACATGAGGGGCTTCTTGTCTATGAATACATGCCTCAAGGGCCGCTTAGCAGGCATTTGTTTGATTGGAAGGATGAAGGGATAAAGCCTTTGGAGTGGAAGCAAAGGCTTATTATAGCTTTGGATGTTGCTAGAGGTGTTGAATACCTTCATAATTTGGCACAACAGATCTTCATCCATAGGGATTTGAAGCCATCAAACATCTTGCTTGGGCATGATTTGCGAGCTAAAGTTTCGGATTTTGGATTGGTCCGGCTTGCCCCTGAAGGACAGACATCGTTCGAGACTAGACTTGCCGGAACTTTTGGATACCTAGCTCCGGAGTATGCTGTAACCGGACGAGTTACAACAAAGGTTGATGTATATAGCTTTGGGGTGGTTCTTATGGAGATGATAACTGGAAGGAAAGCTATAGATAACAGCCAGCAGGAAGAGAACATCCACCTTGTTACATGGTTCCGGAGGATGCTGCTGAACAAAGATTCGTTTCGGAAGGCCATCGACCCAGCAATTGATACTGTGGATGAAGAAACCTTAGCCAGTGTTATCACTGTTTCAGACTTGGCTGGCCACTGCTGCGCAAGGGAGCCGTATCAGCGGCCGGATATGGGCCATGTGGTGAACGTGTTAGCGCCTCTTGTTGAGGTGTGGAAGCCCACGGAACCAAGGGGCGAAGACACGTTTGCCATAAATTTCGACGAGAGTTTGCCAGAAGCATTGAGCAAGTGGCAGGCCTATGAAGGAACAAGCACCATGGATATCTCATCTTCATCTACATCAATGCTTACCAGCCGAGACAATACACAATCAAGCATACCTAATCGCCCTGTTGGATTTGCAGAAACCTTTACATCTTACGATGGACGATAA 2781 0.4631 MGSDERFVVLVGVVLVLSLMPFSMSDDAAVMKALRGSITSPGLNWTSADVCSWSNVRCDNGPGRVTAIQIANLNLAGTLPKDLGQLGQLQHFDCRANNFTGAFPHLATTLQTLNINNNGFTSFPEDFFEGMSSLQVVSIGSNSFSQWKVPESLKDCVSLTSFSAIGANFSGKIPEFFGSSGPFGSLQNLSLSFNNFDGGLPDSFSGSGIQNLWVNVLPGNNKLSGTLSVLQNMTSLRQIWVHGNNFTGPIPDFSNHDSLYDVSLRDNKLTGVVPESLVNLPSLKVVNLTNNRLQGPPPKFRDGVRVDDVINQGNQFCTNVIGGKCSEIVDILLKVVEPLGYPLMLAESWSGNDPCGGNGWMGIDCDGGIVRGINFQNKGFSGTISPSFAKLTNVTRLLLNNNRLTGTIPEELTTMPNLMVLDVSNNQLYGKVPKFREGVKVNTSGNPDIGKDKPSGGGGSSSGGISGHTGVIVGVVVGILVLLVAGILLYKYCGKNKGGGKAQPPNAIVVHPRRSGEGDALKISVADATAAAAAASASASSPKSDVHHVEASNFVISIQVLRQVTNNFSQENILGKGGFGTVYKGELPDGTQIAVKRMESGVVGEGEKGLTEFNSEIAVLTKVRHRHLVELIGHCLDGHEGLLVYEYMPQGPLSRHLFDWKDEGIKPLEWKQRLIIALDVARGVEYLHNLAQQIFIHRDLKPSNILLGHDLRAKVSDFGLVRLAPEGQTSFETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVVLMEMITGRKAIDNSQQEENIHLVTWFRRMLLNKDSFRKAIDPAIDTVDEETLASVITVSDLAGHCCAREPYQRPDMGHVVNVLAPLVEVWKPTEPRGEDTFAINFDESLPEALSKWQAYEGTSTMDISSSSTSMLTSRDNTQSSIPNRPVGFAETFTSYDGR* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3404 926 PANTHER OSJNBA0070M12.3 PROTEIN 9 926 - -
Amo10g3404 926 ProSiteProfiles Protein kinase domain profile. 568 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g3404 926 MobiDBLite consensus disorder prediction 891 915 - -
Amo10g3404 926 SUPERFAMILY Protein kinase-like (PK-like) 547 847 IPR011009 -
Amo10g3404 926 CDD STKc_IRAK 574 850 - -
Amo10g3404 926 ProSitePatterns Protein kinases ATP-binding region signature. 574 596 IPR017441 GO:0005524
Amo10g3404 926 Pfam Leucine rich repeat N-terminal domain 25 59 IPR013210 -
Amo10g3404 926 Pfam Leucine rich repeat N-terminal domain 346 366 IPR013210 -
Amo10g3404 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Amo10g3404 926 Gene3D Phosphorylase Kinase; domain 1 528 647 - -
Amo10g3404 926 MobiDBLite consensus disorder prediction 891 926 - -
Amo10g3404 926 MobiDBLite consensus disorder prediction 440 462 - -
Amo10g3404 926 Gene3D Ribonuclease Inhibitor 328 453 IPR032675 -
Amo10g3404 926 SMART LRR_typ_2 391 415 IPR003591 -
Amo10g3404 926 SMART LRR_typ_2 183 206 IPR003591 -
Amo10g3404 926 SMART LRR_typ_2 280 302 IPR003591 -
Amo10g3404 926 SMART LRR_typ_2 108 130 IPR003591 -
Amo10g3404 926 Pfam Leucine rich repeat 109 161 IPR001611 GO:0005515
Amo10g3404 926 Pfam Protein kinase domain 569 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g3404 926 Gene3D Ribonuclease Inhibitor 25 323 IPR032675 -
Amo10g3404 926 SUPERFAMILY L domain-like 38 433 - -
Amo10g3404 926 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 9 926 - -
Amo10g3404 926 SMART serkin_6 568 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g3404 926 Gene3D Transferase(Phosphotransferase) domain 1 648 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3404 Amo-Chr10 99652477 99656400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3404 40 876 Receptor kinase-like Gene Family AT5G65700 29.303 4.72e-91 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Amo10g3404 Pkinase 7.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3404 - K00924 adu:107472017 1737.24