LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo10g3403	ATGTGTTTTCCCTCCCTTTCATGTCTCTGTAAAATAGCAATAGTAATGTTGGTGGGAGGTTTAGGAGAAGAAGAAATAGCAAAAGCTCAGTTTCACCAAAGAAATCATGGAGATATCCATAACAAACTCCTTCCTTATTTGACAGTTTCTGTTGACCAATCTGGCCATGCTAACTTCTCTACAATTCAATCTGCAATTGATTCAGTCCCTTCCAACAATAAGCATTGGGTTTTAATCAATGTCAGGGCTGGAGAGGGAAAAAGGAACACTCTTGTTGACTGGGATGACCATGCTACCACCTCACAGAGCCCTACATTCTCAACAATGGCTGACAATGTTGTTGTCAAGTCAATCAGTTTTAGGAATTCATACAATAATCCAAGAAATAGTAATCCAATTGAACCTGCAGTAGCTGTAATGGTAAGTGGAGACAAGTCATATTTCTATGATGTTGGCTTTTTTGGTCTTCAAGACACTTTGTGGGATGATCAAGGAAGACATTACTATAAATTTTGTACTATTGAAGGTGCTGTTGATTTTATTTTTGGTGCTGGTCAGTCTTTATATGAGGGATGTAGCATATCTGTTATTGGAGCGTCCCTAGATCCTGGTTATGTTGGTTTTATCACAGCACAGGGGAGAACAAATTCAAATGATGCAAATGGGTTTGTGTTTAAAAATTGTAAAATATTTGGAAATGGAACCACATTTTTGGGAAGACCATGGAGAGGTTACGCTAGAGTTCTTTTTTATAACACAAGCATGTCTAACGTTATACTACCAACAGGTTGGGATCCATGGAATTTCAATCATCATGAGAATCGCGTAACTTTCGCAGAGTATAAGAATTTTGGACCCGGTTCTAACATTTCATTGCGAGTGAAGTGGAGTAAGAAGCTTAGTTTAGCAACAATTAAATCAATGATTAGCACTAAGTTCATTGACAATGAAGGTTGGCTTAAGGCACAAGACTTCTAA	978	0.3783	MCFPSLSCLCKIAIVMLVGGLGEEEIAKAQFHQRNHGDIHNKLLPYLTVSVDQSGHANFSTIQSAIDSVPSNNKHWVLINVRAGEGKRNTLVDWDDHATTSQSPTFSTMADNVVVKSISFRNSYNNPRNSNPIEPAVAVMVSGDKSYFYDVGFFGLQDTLWDDQGRHYYKFCTIEGAVDFIFGAGQSLYEGCSISVIGASLDPGYVGFITAQGRTNSNDANGFVFKNCKIFGNGTTFLGRPWRGYARVLFYNTSMSNVILPTGWDPWNFNHHENRVTFAEYKNFGPGSNISLRVKWSKKLSLATIKSMISTKFIDNEGWLKAQDF*	326

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo10g3403	325	PANTHER	PECTINESTERASE 10-RELATED	84	324	-	-
	Amo10g3403	325	PANTHER	PECTINESTERASE 10-RELATED	36	84	-	-
	Amo10g3403	325	Pfam	Pectinesterase	84	314	IPR000070	GO:0030599\|GO:0042545
	Amo10g3403	325	Gene3D	-	46	325	IPR012334	-
	Amo10g3403	325	ProSitePatterns	Pectinesterase signature 2.	174	183	IPR033131	-
	Amo10g3403	325	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	84	324	-	-
	Amo10g3403	325	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	36	84	-	-
	Amo10g3403	325	SUPERFAMILY	Pectin lyase-like	47	322	IPR011050	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo10g3403	Amo-Chr10	99637443	99641856	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo10g3403	48	273	Carbohydrate Esterase	AT2G19150	41.870	1.46e-66	209

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo10g3403	-		-	ahf:112786588	416.001

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