Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3398 ATGTTGCTATTTCTTGTTCGTTGGTGGATTTGTGTGTTTGTGGTGTTAAATTCAGGAGCTGTTAATGGTCAGTATTATCGAACTGTTGGAGACAAAATCCTTCCATATAACAAAATTATTGTGGATTCTTTGGGACATGGCAACTTCTTTACAATTCAATCTGCCATTGATTCAGTCCCTTCCAACAATAAATATTGGATTTTAATCAATGTGAAGGCTGGTATTTACAGGGAAAAAGTGACAATTCCAATTGATAAACCATACATAATATTGAAGGGAAGTGGAAAGATGAAAACGTGGGTTGAATGGGATGACCATAATACAACTGCTCAGAGCCCCACCTTCCAATCCAATGCTGATAATATCGTCGTCAAATCCATCTCTTTTAGGAATACATACAACAATCCCATAAATACGAACCCTAGGGTTCCTGCAGTAGCTGCAATGATAAGCGGAGATAAATCTTATTTTTATAGAGTTGGATTTTTTGGTTTGCAAGATACTTTGTGGGATAATTATGGAAAACATTATTATAAACTTTGTACTATTCAAGGGGCGGTTGATTTTATCTTCGGTGCTGGCCAGTCATTATTTGAGAGATGTGGCATAAATGTGATTGGAAGGGCATTAGAAGAAGGTTTTATAGGATATATAACAGCACAAGGAAGAGAAAATCCAAAAGATTCAAATGGATTTGTATTTAAAAATTGTAATGTCTTTGGAGATGGTTCTACTTTTTTGGGAAGACCTTGGAGACCTTACGCCAGCGTTCTTTTCTACAATACAAGTATGGCCAACATTATTCAACCCGCTGGTTGGGATCCATGGGATTCCTCTCAATATGAGGATAATATTATGTTTGCAGAGTATAACAATTTTGGACCAGGTTCTGATACCTCCAATCGAGTAAATTGGATTACAAAATTGGATTTAGAGACGGTTAATACGATGACAAATATAACTTTCATAGACTCTGAAGGATGGATTCAGAAGAGCCAACGATTTTAA 1008 0.3621 MLLFLVRWWICVFVVLNSGAVNGQYYRTVGDKILPYNKIIVDSLGHGNFFTIQSAIDSVPSNNKYWILINVKAGIYREKVTIPIDKPYIILKGSGKMKTWVEWDDHNTTAQSPTFQSNADNIVVKSISFRNTYNNPINTNPRVPAVAAMISGDKSYFYRVGFFGLQDTLWDNYGKHYYKLCTIQGAVDFIFGAGQSLFERCGINVIGRALEEGFIGYITAQGRENPKDSNGFVFKNCNVFGDGSTFLGRPWRPYASVLFYNTSMANIIQPAGWDPWDSSQYEDNIMFAEYNNFGPGSDTSNRVNWITKLDLETVNTMTNITFIDSEGWIQKSQRF* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3398 335 PANTHER PECTINESTERASE 10-RELATED 13 332 - -
Amo10g3398 335 Gene3D - 35 334 IPR012334 -
Amo10g3398 335 ProSitePatterns Pectinesterase signature 2. 183 192 IPR033131 -
Amo10g3398 335 Pfam Pectinesterase 39 325 IPR000070 GO:0030599|GO:0042545
Amo10g3398 335 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 332 - -
Amo10g3398 335 SUPERFAMILY Pectin lyase-like 37 331 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3398 Amo-Chr10 99608434 99610560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3398 39 282 Carbohydrate Esterase AT2G19150 47.347 2.50e-74 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3398 - - ahf:112786588 637.876