Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3387 ATGGAGAAAATGCCAGGGATTGCAGAAGCTGATGAGCCACCAACTTCTCCTTCCCTACCAGATTCACCTTGGCCACCGACTTCGCCTTCACTACCAGATTCACCTTGGCCACCGGCTTCACCTTCAGAACTCAATGCAGTGTCTGATATGGAAACGACACAAGTGCCTCCTACAGAGCTTTCTATTATCAGTAAGAAGGGGTTTGGGACCACGGGAAAGAGGATACAATTGCTTGCCAATCACTTCAAAGTTGATGTTACTGATCCAGATGCAATATTTTTCCAATATAGTGTTGCTATTACTACAGAAGATAAAAGAACTGTCGAAGGCAAGGGCATTGGGAGAAAATTGATTGATAGGCTTTGCCAAACTTACTCGTCTGAACTTGGTGATAAAAGGTTTGCCTATGATGGAGAGAGAACTTTGTATACAGTCGGTCCTTTGCCATTTGATAAGTTTGAGTTCAAAGTATTGCTTGAGGAATCATTTGCGAAGCACCCTGGTGCTGATAATCCTGGTGCCAATGGAAGCCCTCATGAAGAAACCAAAAGGTCAAAGCATTCTTTTCAGTCCAAGGCATTCATAGTGGAGATAAGTTTCGCTGTCAAAATACCCCTGCGGTCCATTGCTCTTCCCCTAGAAGAGGTTGAGTCAGATACTAACTATCAGGATGCTTTGAGAGTGCTTGATATTGCACTGAGGCAGCAAGCAGCTAACAGAGGGTGTCTCTTGGTAAGACAATCTTTTTTTCAAGATGATGCAAGGAACTTCAGTGAGATCGGAGGCAATTTGATGGGAATTCGTGGTTTTCATTCTAGTTTTCGTCCAACGCTGGGTGGATTGTCTCTCAATATGGATGTGTCCACAACAGTGGTCTTAAAAGCTGGACCTGTAATTGAATTTCTTCTTTATAACCAGAATGTGAAGGAAACCCGTTACATTGACTGGGCAAAGGCAAAAAAGGTGCTTAAAAATTTAAGAGTGCATGCAAAACATCGTAACCAGGAATTTAAAGTTTCCAGCTTGAGTGAGAAACCTTGCATTCAACAACTTTTTAGCATGAAGTTGAGGAATGATGATGACAAAAATCAAGGGGAGACAGTCAATATTACTGTATATGAGTATTTTGCTAAACACCACGGCTTGAAGCTGACCTCTTCTGCTTATCTTCCATGCCTTGATGTTGGGAAGCCAAACCGGCCTATTTATCTGCCTTTGGAGCTATGTTCTCTTGTTTCACTCCAGCGGTACACGAAGGCATTATCTCCAATTCAGAAAGCATCTTTAATTGAAAAATCACGCCAAAAACCTCAAGACAAGATTAAGACTCTGACAAATGCTGTAGGAAATAATTCCTATGATCATGACCCTGTACTTGCTGCATGTGGAATTTATGTTGACAAGAAATTGACTGAGGTTGAAGGCCGTGTTCTTGAGCCACCAAAGTTGAAGGTTGGAAAGAATGATGATTGCTTCCCCAATAATGGAAGGTGGAGTTTCAGTAAAAAGACACTTCTACAACCATCACACATTGATTACTGGGCTGTTGTCAACTTTTCTGCACGTTGTGATACCAGTTACTTATCGAGGGAGCTGATCAAATGTGGAATGAGCAAGGGCATTAATATTGAACGCCCATATACTTTAATAGAAGAAGAACCACTGATGAAAAAATCTAGTGCTGTTGCAAGGGTTGAAAAGATGTTTGAGCGGCTTACGTCAAAGCTGACAAGAGAACCAAAGTTAATTCTCTGTGTCTTGCCAGAGAAGAAACATTGTGAAATTTATGGGCCTTGGAAGAAGAAGTGTCTCAGTGATTTTGGTGTTGTCACACAGTGCATTTGTCCTCTCAAGATCACTGATCAATACCTTACAAATGTACTTCTTAAAATCAACTCTAAGCTTGGAGGAGTAAATTCTTTGCTGGCAATAGAGCACTCTGGGCATCTACCCCTGATTAAAGATACCCCAACAATGATTTTGGGAATGGATGTCTCTCATGGTCCTCCTGGTCAGTCAAATCTTCCATCGATAGCAGCAGTTGCAGGATCACGATGTTGGCCACTGATTTCAAGGTATAGAGCATCTGCAAGAACACAGTCATCTAAGGAGGAGATGATTGATGCCTTGTGCAAGCCTGTGGATGAAGAGAATGATAATGGTATTATCAGAGAATTGCTTCTAGATTTCTACGAATCAAGTGATAAATGTAAACCATCTCAAATTATTGTCTTCAGGGATGGAGTTAGTGAATCACAATTTAATCAGGTTTTGAATGTTGAGCTTAACCAGATAAAGAAGGCGTACGAACTTCTTGAGGCTGTCATTATTCCCAAGTTCACAGTAATTGTGGCGCAGAAGAATCATCATACAAAGTTGTTTCTAGCTAATGGTCCAGAAAATGTTCCTCCTGGGACTGTTGTTGACACAAAAATCACACATCCAAGGAATTATGATTTCTACATGTGTGCTCATCAAGGGATCCATGGAACTTCCAAGCCTGTGCATTATCATGTGCTGCTCGACGAGATCGGTTTCTCGGTAGATGGCTTACAAAATTTGATCCATTCGCTGTCTTATGTGAACCAAAGGAGTACAATTGCAACCTCAATTGTGGCACCTATATGCTATGCACACCATGCTGCAGCTCAGATGGGGCAAATGTTAAATTTTGATGATTTGTCAGAAAAATCTTCAGATGTTACTTCAGAGGGAAACATTCCCATTCCAGAGCTTCCAAGGTTGCATAGGAATGTCAAGAGTACCATGTTCTTCTGTTGA 2781 0.4139 MEKMPGIAEADEPPTSPSLPDSPWPPTSPSLPDSPWPPASPSELNAVSDMETTQVPPTELSIISKKGFGTTGKRIQLLANHFKVDVTDPDAIFFQYSVAITTEDKRTVEGKGIGRKLIDRLCQTYSSELGDKRFAYDGERTLYTVGPLPFDKFEFKVLLEESFAKHPGADNPGANGSPHEETKRSKHSFQSKAFIVEISFAVKIPLRSIALPLEEVESDTNYQDALRVLDIALRQQAANRGCLLVRQSFFQDDARNFSEIGGNLMGIRGFHSSFRPTLGGLSLNMDVSTTVVLKAGPVIEFLLYNQNVKETRYIDWAKAKKVLKNLRVHAKHRNQEFKVSSLSEKPCIQQLFSMKLRNDDDKNQGETVNITVYEYFAKHHGLKLTSSAYLPCLDVGKPNRPIYLPLELCSLVSLQRYTKALSPIQKASLIEKSRQKPQDKIKTLTNAVGNNSYDHDPVLAACGIYVDKKLTEVEGRVLEPPKLKVGKNDDCFPNNGRWSFSKKTLLQPSHIDYWAVVNFSARCDTSYLSRELIKCGMSKGINIERPYTLIEEEPLMKKSSAVARVEKMFERLTSKLTREPKLILCVLPEKKHCEIYGPWKKKCLSDFGVVTQCICPLKITDQYLTNVLLKINSKLGGVNSLLAIEHSGHLPLIKDTPTMILGMDVSHGPPGQSNLPSIAAVAGSRCWPLISRYRASARTQSSKEEMIDALCKPVDEENDNGIIRELLLDFYESSDKCKPSQIIVFRDGVSESQFNQVLNVELNQIKKAYELLEAVIIPKFTVIVAQKNHHTKLFLANGPENVPPGTVVDTKITHPRNYDFYMCAHQGIHGTSKPVHYHVLLDEIGFSVDGLQNLIHSLSYVNQRSTIATSIVAPICYAHHAAAQMGQMLNFDDLSEKSSDVTSEGNIPIPELPRLHRNVKSTMFFC* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3387 926 Pfam Piwi domain 582 889 IPR003165 GO:0003676
Amo10g3387 926 Pfam Argonaute linker 1 domain 245 292 IPR014811 -
Amo10g3387 926 Pfam Argonaute linker 2 domain 443 484 IPR032472 -
Amo10g3387 926 SMART Piwi_a_2 582 890 IPR003165 GO:0003676
Amo10g3387 926 Gene3D - 477 643 - -
Amo10g3387 926 ProSiteProfiles PAZ domain profile. 320 413 IPR003100 GO:0005515
Amo10g3387 926 Pfam PAZ domain 299 428 IPR003100 GO:0005515
Amo10g3387 926 CDD Piwi_ago-like 457 884 IPR045246 -
Amo10g3387 926 SUPERFAMILY Ribonuclease H-like 567 890 IPR012337 -
Amo10g3387 926 SMART DUF1785_2 243 295 IPR014811 -
Amo10g3387 926 PANTHER PROTEIN ARGONAUTE 6 55 925 - -
Amo10g3387 926 Coils Coil 755 775 - -
Amo10g3387 926 Pfam N-terminal domain of argonaute 73 233 IPR032474 -
Amo10g3387 926 Gene3D paz domain 289 417 - -
Amo10g3387 926 SMART PAZ_2_a_3 293 435 IPR003100 GO:0005515
Amo10g3387 926 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 55 925 - -
Amo10g3387 926 ProSiteProfiles Piwi domain profile. 582 890 IPR003165 GO:0003676
Amo10g3387 926 CDD PAZ_argonaute_like 295 412 - -
Amo10g3387 926 MobiDBLite consensus disorder prediction 16 39 - -
Amo10g3387 926 Gene3D - 649 926 IPR036397 GO:0003676
Amo10g3387 926 MobiDBLite consensus disorder prediction 1 44 - -
Amo10g3387 926 SUPERFAMILY PAZ domain 290 453 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3387 Amo-Chr10 99543893 99552083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3387 65 926 Eukaryotic Initiation Factors Gene Family AT1G48410 36.453 4.50e-165 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3387 K11593 - gmx:100778875 1372.84