Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3340 ATGATTTTGGAACAGCGTATACCAATCGAGTTTTCGAGAAAGAACTTACATGGGTTAGAGGGAAAAGCCAAAATTGGAGTTAATGGTAACATGAGATGGGATATTGTGTTAAGATTTTGTGGTGATAGAGCTACTTTCAGTGCTGGTTGGAGAAATGTTTCCAATGATTTTGGCTTAAAATTTGGTGATGTTTGTGTTTTTGAGATGATTAAGGACACTCCACTTTCCTTCAACATTTTTCTCATCAGACCCAAACAGCAACCAATAAGCCTTTGCCACCAAAACTTGCCAGTATTAGAAAGATAA 306 0.3693 MILEQRIPIEFSRKNLHGLEGKAKIGVNGNMRWDIVLRFCGDRATFSAGWRNVSNDFGLKFGDVCVFEMIKDTPLSFNIFLIRPKQQPISLCHQNLPVLER* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3340 101 Gene3D - 3 86 IPR015300 -
Amo10g3340 101 SUPERFAMILY DNA-binding pseudobarrel domain 6 80 IPR015300 -
Amo10g3340 101 ProSiteProfiles B3 DNA-binding domain profile. 1 85 IPR003340 GO:0003677
Amo10g3340 101 CDD B3_DNA 6 80 IPR003340 GO:0003677
Amo10g3340 101 Pfam B3 DNA binding domain 6 79 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3340 1 75 B3 DNA Binding Superfamily AT5G18090 33.333 5.99e-10 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3340 B3 2.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3340 - - adu:110277002 201.06