Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3339 ATGCCCTACCATAACATGTTTTTTAAGGTTCTTCGTCATCCCAACCTTTATGATGAAACGAAAGTGACAAAAAGTTTTGTGAAGAAATATTGGAAAGAAGTATCAAATCCTATATTGTTGGAGCTACCGTCGGGTGATAAAATAAAAGTAAGATGGAATAAAAAAGAAGATGATAGTATATGGTTGAACGAAGGTTGGAAAAGAGTCGTAGAATTATTAGAATTAAAACACCAATATTTTGTGATTTTTAAATATAAAGGAGAATCTAAATTTGAGCTTATAGTGTTTGATTTAAGTGCTATGGAGATCGATTATTTAAGTTCGAAAAGTTTTCGTAATGATTATCATCAAGGGGAAAATAGAAATCATGATGATGACGACGACGACAATCAGCCTATTGAAACAGTGAATGAAAGACAAGAACAATTCAGAAGAAGAAGCAGAGCAGCAAAATATATTTTGTTCTTTATTTTTTTATATATAAAAAAATTATTTTCTTGTAGTGAAAGACTTAAAAGAGTTCAAAGTGATTCAAAAATTGCTCCGAAGAAGGATAATAAACCGTTGGCAGTAGAATTTCAAAGCAAAAAAGCATTGATGAATAGAGCCCAAGTTTTCTGCCTAAACTCAAAATATCCTTGCTTCATACTAGAAATGCAAAGATCTTATATTTCACATGATCTACTGATATTGCGGTTGTGA 702 0.3091 MPYHNMFFKVLRHPNLYDETKVTKSFVKKYWKEVSNPILLELPSGDKIKVRWNKKEDDSIWLNEGWKRVVELLELKHQYFVIFKYKGESKFELIVFDLSAMEIDYLSSKSFRNDYHQGENRNHDDDDDDNQPIETVNERQEQFRRRSRAAKYILFFIFLYIKKLFSCSERLKRVQSDSKIAPKKDNKPLAVEFQSKKALMNRAQVFCLNSKYPCFILEMQRSYISHDLLILRL* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3339 233 SUPERFAMILY DNA-binding pseudobarrel domain 5 99 IPR015300 -
Amo10g3339 233 CDD B3_DNA 6 97 IPR003340 GO:0003677
Amo10g3339 233 PANTHER B3 DOMAIN-CONTAINING 6 227 - -
Amo10g3339 233 SMART B3_2 7 99 IPR003340 GO:0003677
Amo10g3339 233 Gene3D - 3 100 IPR015300 -
Amo10g3339 233 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 227 - -
Amo10g3339 233 Pfam B3 DNA binding domain 7 95 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3339 Amo-Chr10 99079483 99081047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3339 21 108 B3 DNA Binding Superfamily AT3G18990 35.227 3.81e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3339 B3 8.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3339 - - ahf:112786607 296.589