Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3338 ATGGCTTTCTATAACATGTTTTTTAAGGTTCTTATTGATCCCAACCAACTGAGGGAAAACCAACCAAAATGGAAGAAGCCGTCTACACTTCATGAATTGGAGATACCACCAAAGTTTGTAGAGAAAAATTGGAAAAAATTATCAAATCCGTTATTGTTGGAGCTACCAACCGGAGATAAAACAGAAGTAAAATGGGTCAAGAAAAAAAATAATAGCGTTTGGTTAAATGAAGGTTGGAGAAGAGTTGTGGAATTGTTAAAACTAAAGCATGGATGTTTTGTGACTTTTAAATATAATGGGAAATCGAAATTTGAACTCATGGTGTTTCATCCGAATACTTTAGAAATTGATTACTCAAGTGTGAGAGGTTTCTATAACGATGATCATCATCAAGGTGCAAATGAAAATGATGATGATGGTGGTGATGATGATGATGACTCTATTGAGATTATTGCTGAAGAGCCAGAACAATTCAACAACAGAAGCAGAGAAGGAACTTGTAAAAGCATGCTCAAAGAAGTTCATGAAAATCATGACTATATTGTAATTGATGATGATGATGATGATGATGAATGGCACTCTAAACCACTCTTGATGAGAAAGAGAACCAAAACAAAAGGAACAAGTAAAAGCATCCTCAAAAAAGTGAGGAGAAATATGAAATGTGATGATAACCGGAGCAAGGCACTGGAGAGGGCTGAAGCCATCTCTTCAAAGCTGAAAAATCCTTCTTTTGTTCGTGATTTGAAGCGTTCATATGTTGATTACGGGATCATGCAAATACCAAGTTCATTTTCGGAACAATATTTATATAGATTAAAAGGAAGTGGCACAATTTGGGTTAGTGATAATGAAGACATGAAATGGAGCATCAAATACAGTTACAATGATTCTCAGAACAGAACAAGTATCTATGGTGAATGGCACAAATTTAGAGAAGAAAATGGGTTAGAAGTTGGTGATGTTTGTGTATTCGAAATGATGACGAAAGTTGAACCCCATTCCTTCAAAATTTACATCATCCGAGTCAGACAAGAATCATCATCATCTTATCCTCATCAATTCCAAGAGTCCGAAAGTCCCAATAGGCAGACGAATAATCAATTCGAGCTTCTGATAACAGAATCTAAATTGAAGACACCAACACGCGTGAGAATACCAAGGAGCTTTATTTGCAGGAATGAAAGATGTGTTGGGAAAGATGTGACATTTAAAGTTGGAAAAGAATCGTGGATTGTGAAAGTGTTGAATTCTGGTTCGTTTTGTAAAGGTTGGATTCAGTTCGCAAGAGAATGCAAATTAGTTGTTGGAGATATTTGTTATTTTGAACTCACTGACCCCACTAATTTTGTGTTCCATGTTTCCATTTCTAAGGAGGAGCATCGTTCATGA 1392 0.3592 MAFYNMFFKVLIDPNQLRENQPKWKKPSTLHELEIPPKFVEKNWKKLSNPLLLELPTGDKTEVKWVKKKNNSVWLNEGWRRVVELLKLKHGCFVTFKYNGKSKFELMVFHPNTLEIDYSSVRGFYNDDHHQGANENDDDGGDDDDDSIEIIAEEPEQFNNRSREGTCKSMLKEVHENHDYIVIDDDDDDDEWHSKPLLMRKRTKTKGTSKSILKKVRRNMKCDDNRSKALERAEAISSKLKNPSFVRDLKRSYVDYGIMQIPSSFSEQYLYRLKGSGTIWVSDNEDMKWSIKYSYNDSQNRTSIYGEWHKFREENGLEVGDVCVFEMMTKVEPHSFKIYIIRVRQESSSSYPHQFQESESPNRQTNNQFELLITESKLKTPTRVRIPRSFICRNERCVGKDVTFKVGKESWIVKVLNSGSFCKGWIQFARECKLVVGDICYFELTDPTNFVFHVSISKEEHRS* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3338 463 MobiDBLite consensus disorder prediction 127 147 - -
Amo10g3338 463 SUPERFAMILY DNA-binding pseudobarrel domain 27 119 IPR015300 -
Amo10g3338 463 Gene3D - 352 461 IPR015300 -
Amo10g3338 463 Gene3D - 222 346 IPR015300 -
Amo10g3338 463 Gene3D - 4 113 IPR015300 -
Amo10g3338 463 ProSiteProfiles B3 DNA-binding domain profile. 369 460 IPR003340 GO:0003677
Amo10g3338 463 Pfam B3 DNA binding domain 30 108 IPR003340 GO:0003677
Amo10g3338 463 Pfam B3 DNA binding domain 252 342 IPR003340 GO:0003677
Amo10g3338 463 Pfam B3 DNA binding domain 373 457 IPR003340 GO:0003677
Amo10g3338 463 ProSiteProfiles B3 DNA-binding domain profile. 33 112 IPR003340 GO:0003677
Amo10g3338 463 PANTHER B3 DOMAIN-CONTAINING 22 343 - -
Amo10g3338 463 PANTHER B3 DOMAIN-CONTAINING 354 458 - -
Amo10g3338 463 SUPERFAMILY DNA-binding pseudobarrel domain 241 341 IPR015300 -
Amo10g3338 463 SUPERFAMILY DNA-binding pseudobarrel domain 365 457 IPR015300 -
Amo10g3338 463 SMART B3_2 245 344 IPR003340 GO:0003677
Amo10g3338 463 SMART B3_2 369 460 IPR003340 GO:0003677
Amo10g3338 463 SMART B3_2 7 112 IPR003340 GO:0003677
Amo10g3338 463 CDD B3_DNA 369 458 IPR003340 GO:0003677
Amo10g3338 463 ProSiteProfiles B3 DNA-binding domain profile. 244 344 IPR003340 GO:0003677
Amo10g3338 463 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 22 343 - -
Amo10g3338 463 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 354 458 - -
Amo10g3338 463 CDD B3_DNA 243 342 IPR003340 GO:0003677
Amo10g3338 463 CDD B3_DNA 6 109 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3338 Amo-Chr10 99072183 99075624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3338 28 328 B3 DNA Binding Superfamily AT3G18990 27.134 5.78e-21 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3338 B3 2.5e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3338 - - aip:107621190 833.943