Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3337 ATGATTCCCAAGAGTTTTGTGAGAAAATATTGGGAAGGGATATCAAATCCTATAATACTAAAGCTACCAAATAATAGGGAAGAAGAAGTATATTGGAGTCAGAGGAAAAAAAATGAAATTTGGTTGCAAAATGGTTGGGATGAAGTTGTGAAATTATGTCACTTGGAATATGAATTTTTGTTAACATTTGAATACAAAGAAAGATCATGCTTTGAACTCAAAGTATATGATAAGAGTGCTTCACAAATAAACTACCATTCAGATTGTGGAGTTCATGAAAATAATCATGATTATATTGTTGTTGATGATCATGTTCAAAGGGAACCAAAGGCAAAGAAGAGAACCAACAAAGCAGGAATTAGAAAAAGCATGCTCAATAATGTTAGGGAGAAAATAGAGATGGCTGAAGCCTTATCTACAAAGCTGAAAAATCCTTCTTTTTTTCTTGTTCTGAAGCCTTCATATGTTCATGGCAATGCTAATCTGGTGCATATACCATCTTCATTTTCCAGACAATACTTAAATGGATTAAAAGGAAGTGGCACGATTTGGGTTAGTGACGATGAAGACTCGAATTGGTCCATTAATTACAATTTTTCTAATATTAGAAAACGAACTACAATCCATGGTGGTTGGAACAAATTTTGCAAGGAAAATAAGCTACAAGTTGGTGATGTTTGTGTCTTTGAAATGATGACTCAAGTCAACCCCCATTCCTTCAAAATTCACATCATTCCAGTCACACAACAACCACCACCAACTCCTCCTCGTCAATTTCAAGAATCTGAAAGTCCCAATAGGCAGACTTATAATCAATTCGAGATTCGAATATCAAAATCTAAATTAAAGCAATTCACTTCATCAGTATTCGTACCCATACCAAAGAAATTTCTTCGCAGGAATGAAAGATGCCTTGGGAAAAATGTGACACTTAAATTTGGAAGAGATTCGTGGACTGTGAAAGTGGTGAATGGTGGATCGTTTAGCAAAGGTTGGGTCCAGTTTGCAACAGAATGCAAATTAGTTGTTGGAGACATTTGTCGATTTAAACTGAGTGACCGTAAAAATTTAGTGTTCCATGTTTCCATTTTTAAGGAGCATCGCTCATGA 1110 0.3514 MIPKSFVRKYWEGISNPIILKLPNNREEEVYWSQRKKNEIWLQNGWDEVVKLCHLEYEFLLTFEYKERSCFELKVYDKSASQINYHSDCGVHENNHDYIVVDDHVQREPKAKKRTNKAGIRKSMLNNVREKIEMAEALSTKLKNPSFFLVLKPSYVHGNANLVHIPSSFSRQYLNGLKGSGTIWVSDDEDSNWSINYNFSNIRKRTTIHGGWNKFCKENKLQVGDVCVFEMMTQVNPHSFKIHIIPVTQQPPPTPPRQFQESESPNRQTYNQFEIRISKSKLKQFTSSVFVPIPKKFLRRNERCLGKNVTLKFGRDSWTVKVVNGGSFSKGWVQFATECKLVVGDICRFKLSDRKNLVFHVSIFKEHRS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3337 369 Gene3D - 1 80 IPR015300 -
Amo10g3337 369 SUPERFAMILY DNA-binding pseudobarrel domain 143 243 IPR015300 -
Amo10g3337 369 PANTHER B3 DOMAIN-CONTAINING 1 245 - -
Amo10g3337 369 PANTHER B3 DOMAIN-CONTAINING 268 366 - -
Amo10g3337 369 Pfam B3 DNA binding domain 147 245 IPR003340 GO:0003677
Amo10g3337 369 Pfam B3 DNA binding domain 290 365 IPR003340 GO:0003677
Amo10g3337 369 Pfam B3 DNA binding domain 1 76 IPR003340 GO:0003677
Amo10g3337 369 ProSiteProfiles B3 DNA-binding domain profile. 148 248 IPR003340 GO:0003677
Amo10g3337 369 SUPERFAMILY DNA-binding pseudobarrel domain 286 365 IPR015300 -
Amo10g3337 369 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 245 - -
Amo10g3337 369 CDD B3_DNA 145 245 IPR003340 GO:0003677
Amo10g3337 369 CDD B3_DNA 293 365 IPR003340 GO:0003677
Amo10g3337 369 ProSiteProfiles B3 DNA-binding domain profile. 276 367 IPR003340 GO:0003677
Amo10g3337 369 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 268 366 - -
Amo10g3337 369 SUPERFAMILY DNA-binding pseudobarrel domain 1 86 IPR015300 -
Amo10g3337 369 ProSiteProfiles B3 DNA-binding domain profile. 1 79 IPR003340 GO:0003677
Amo10g3337 369 SMART B3_2 285 367 IPR003340 GO:0003677
Amo10g3337 369 SMART B3_2 1 79 IPR003340 GO:0003677
Amo10g3337 369 SMART B3_2 147 248 IPR003340 GO:0003677
Amo10g3337 369 Gene3D - 126 249 IPR015300 -
Amo10g3337 369 Gene3D - 257 367 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3337 Amo-Chr10 99066675 99069453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3337 2 361 B3 DNA Binding Superfamily AT4G00260 24.682 1.57e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3337 B3 3.3e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3337 - - aip:110267705 722.235