Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3333 ATGGCTTTTAATCAACAAGGGGAACCCACTAATAGTGTTGTTAGTTTCTTCAAGATCATTTGTCGTTGGCATATTCGAGATGAGAAGATTAAGCTTCCAACGGAATTCACAAACAAATGTGGATTGAAACTCCCAAATCCGGTGATTCTGAAAGTTGTAAATGGCAACCAAAAGAAAGTGCATTGGACCAATATTAATGGTTCCATTTGGTTTATTGGGAAGGAATGGAAAGAGTTTCTTGAGCACTACTCTGTCTCCCATGGCCACCTTTTGTTGTTCAAATATTGTCCTGATGCTTCATATTTTAGGGTTCAAATATTTGATAACACTACTCTTGAAATTGATTACCCTTCCCCTGAACTCAATTATGCTGATTATGATGATGATGATTTTGATTTTGATGATGATGGTGATGGTGATGGTGATGATGATGTTATGAAGGTTCACTATGATCAATATCAATTCAAAGAGAAAAATAAGAGTATTGCTGATGCTATAAAGAGTAGAGACAGACAAGAGAGACAAGATGGCAACCCCAATTTTGAAGTTGTCATGAGGGATTCATATATCAATGGAGGAAGATGCATGGCCATACCATCTAATTTTGCAAGGAAGTACATGAAGGAAGGAGGGTACCTACTAAGAGTGGAAGATGGGAGGGCATGGAAAGTGATGTTTAAGACTTGGAGTGGAGATGGAGTGCCTTACAAGAAATACAAATTGCAAAAGGGTTGGGCCAAATTTAGCCAAGGAAACAAGTTACAAAAGGATGATGTTTGTGTCTTTGAGCTTCTTTACAACAACAATTCTAATGGTAGCTCCACTACCATACCAACCTTCAATGTTCTAATTCACCGGAACCACATTGGTAGCAGCTATTCACCATGA 888 0.3818 MAFNQQGEPTNSVVSFFKIICRWHIRDEKIKLPTEFTNKCGLKLPNPVILKVVNGNQKKVHWTNINGSIWFIGKEWKEFLEHYSVSHGHLLLFKYCPDASYFRVQIFDNTTLEIDYPSPELNYADYDDDDFDFDDDGDGDGDDDVMKVHYDQYQFKEKNKSIADAIKSRDRQERQDGNPNFEVVMRDSYINGGRCMAIPSNFARKYMKEGGYLLRVEDGRAWKVMFKTWSGDGVPYKKYKLQKGWAKFSQGNKLQKDDVCVFELLYNNNSNGSSTTIPTFNVLIHRNHIGSSYSP* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3333 295 CDD B3_DNA 179 286 IPR003340 GO:0003677
Amo10g3333 295 Gene3D - 10 111 IPR015300 -
Amo10g3333 295 SMART B3_2 181 273 IPR003340 GO:0003677
Amo10g3333 295 SMART B3_2 16 110 IPR003340 GO:0003677
Amo10g3333 295 ProSiteProfiles B3 DNA-binding domain profile. 181 288 IPR003340 GO:0003677
Amo10g3333 295 CDD B3_DNA 15 108 IPR003340 GO:0003677
Amo10g3333 295 PANTHER B3 DOMAIN-CONTAINING 11 161 - -
Amo10g3333 295 Gene3D - 155 291 IPR015300 -
Amo10g3333 295 SUPERFAMILY DNA-binding pseudobarrel domain 175 267 IPR015300 -
Amo10g3333 295 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 155 286 - -
Amo10g3333 295 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
Amo10g3333 295 PANTHER B3 DOMAIN-CONTAINING 155 286 - -
Amo10g3333 295 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 161 - -
Amo10g3333 295 Pfam B3 DNA binding domain 181 268 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3333 Amo-Chr10 99036831 99039486 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3333 4 129 B3 DNA Binding Superfamily AT4G01580 34.127 3.21e-18 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3333 B3 1.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3333 - - ahf:112784208 577.015