Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3332 ATGCCTTTACATGAAAGAGGTTTCTTTAAAGTTCTTGTTCAAAGCTTTAAGCATGAGTTGAAAATTCCTAAACCTTTTGTGAAAGAATATTGGAGAGGAGTATCAAATCCTATAGTGTTAAAGCTACCAAACACTCTTAAACAAAGAGTATATTGGATTCGAAAGAATGAAGATGAAATTTGGTTGGAAGAAGGTTGGGAACAAGTTGTGAAGGATTTTGGCTTAGAATATTCTCAATTTTTGACTTTTGACTATAAAGGATGGTCTTGCTTTGAAGTCAAAATATATCCCAAGAATGATTCTGAGATAATGCCTCCTCATCATCAAATATGTTTCTTTCAGATTCTTGTTCACAACAAATTTTACCAAAAGCTGAGGGTTCCTAAATGTGCAAATGAATGTTGGAAAAGAATGTCAAATCCTATAAAGTTGGTGTTACCTTATGGTGTTGAGAGGAAAGTGAATTGGACCAAAAGAGGAGAAAAGATTTGGTTGGAACAAGGTTGGGAAAAGGTTGTGGAGTTGTGTGGTTTGAGTCATCAGTGGTTGTTGACTTTTGACTACAATGGAATGTCTCGTTTTGAAGTTAAAGTATATGATAACACTACTTTAAGGGTAGCTTATTATGATGAGTATGATGTTGAGAATAACAAAGATTTTGTTCAAGAACACTTCAAGAGAAAGAAGACCAACACAGTTAATGGGAGCAATAGGAATCCCAGTTTCAAGATTAGAATTCAAGAATCATATGTTGGGTCAAGATGCGTGGCAATACCAGCAACGTTTGCAAGGAAGCATTTGGAGGAAGGACCGATTCGTATGATTGTGGGTAACAGAGCTTGGACTGTGTGCTACAAAACTTGGAGAGGAAGGGCCAGATATCGCAAACACAAATTGCAAAGTGGGTGGCTCAGATTTAGAAGAGAGAACAATTTAGAGGTTGGTGATGTTTGTGTCTTTGAGTTAATTAGCAAATTTCCTCAGACCATGATCGTCAGAGTGCAGAGTGGATGA 1014 0.3679 MPLHERGFFKVLVQSFKHELKIPKPFVKEYWRGVSNPIVLKLPNTLKQRVYWIRKNEDEIWLEEGWEQVVKDFGLEYSQFLTFDYKGWSCFEVKIYPKNDSEIMPPHHQICFFQILVHNKFYQKLRVPKCANECWKRMSNPIKLVLPYGVERKVNWTKRGEKIWLEQGWEKVVELCGLSHQWLLTFDYNGMSRFEVKVYDNTTLRVAYYDEYDVENNKDFVQEHFKRKKTNTVNGSNRNPSFKIRIQESYVGSRCVAIPATFARKHLEEGPIRMIVGNRAWTVCYKTWRGRARYRKHKLQSGWLRFRRENNLEVGDVCVFELISKFPQTMIVRVQSG* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3332 337 PANTHER B3 DOMAIN-CONTAINING 109 223 - -
Amo10g3332 337 ProSiteProfiles B3 DNA-binding domain profile. 241 337 IPR003340 GO:0003677
Amo10g3332 337 SUPERFAMILY DNA-binding pseudobarrel domain 108 201 IPR015300 -
Amo10g3332 337 PANTHER B3 DOMAIN-CONTAINING 234 327 - -
Amo10g3332 337 PANTHER B3 DOMAIN-CONTAINING 7 106 - -
Amo10g3332 337 Gene3D - 104 203 IPR015300 -
Amo10g3332 337 Gene3D - 3 100 IPR015300 -
Amo10g3332 337 Gene3D - 220 336 IPR015300 -
Amo10g3332 337 SUPERFAMILY DNA-binding pseudobarrel domain 8 105 IPR015300 -
Amo10g3332 337 CDD B3_DNA 240 334 IPR003340 GO:0003677
Amo10g3332 337 SUPERFAMILY DNA-binding pseudobarrel domain 237 335 IPR015300 -
Amo10g3332 337 ProSiteProfiles B3 DNA-binding domain profile. 5 99 IPR003340 GO:0003677
Amo10g3332 337 Pfam B3 DNA binding domain 243 334 IPR003340 GO:0003677
Amo10g3332 337 Pfam B3 DNA binding domain 8 97 IPR003340 GO:0003677
Amo10g3332 337 CDD B3_DNA 8 97 IPR003340 GO:0003677
Amo10g3332 337 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 234 327 - -
Amo10g3332 337 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 109 223 - -
Amo10g3332 337 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 106 - -
Amo10g3332 337 SMART B3_2 242 335 IPR003340 GO:0003677
Amo10g3332 337 SMART B3_2 8 99 IPR003340 GO:0003677
Amo10g3332 337 SMART B3_2 112 202 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3332 Amo-Chr10 99031995 99034078 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3332 8 323 B3 DNA Binding Superfamily AT3G18990 25.449 2.59e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3332 B3 5.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3332 - - ahf:112718388 638.262