Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3329 ATCCCAAATCCAGAATCTGTATTGGTTAAGGCTGAAGTACCAATAATTCACCAGCTTAAGGGACCCAGCCATCATTCTTTAAGTGCAATAACTAGGGGTTGTGTGCTTGATCTTCTTAAACTCCCAAAGAATTTCAGTAGAAAATATGGTGCTTCTTTACCAAAGCCTGTGTTTCTCAAGCCTCCAAATGGAACTGAATGGAAAGTAGATTGGACTATGCATGATGCTGCTGTTGTGTTTGAAAATGGTTGGAAAGAGTTTGTTACATATTACTCTATAGATCATGGGCATGTGTTGAAGTTTGAATATAATGGAAATTCCAAATTGGGGGTTCAAATTTGTGACAAGAGTGGCCTTGAAATAAAGTATCCTTTCAATGTTAATCAACAAGAAAAGGTTAACATTATTGAGATCAGTGATGAAGAAGTTCAAGCGTTCGATGAAATGCCTCAACGACAAAACAATAGAAGGAAATCACCAGAGTCTCAGCTTAACCAAAGGAATGGTAATCAGTCTCAAGGGACAAGTTTTTTGAAGTCAACATCAACATCCATTGAAAAAGAATTAGATGGTGATAGAAAGGAAACTCAAACAACTTCAAAGGTTACAAGTCCCCTCGCTGAAACAAGTGGTACTCTGAAGGAAGCTGAGAAATTCACCTCAAAAAATCCGTTTTTCATCATAAATGTAACGAAAAAATTTCTGGACCAAAGCAGACCGAATGTACCAATTGACTTTGTCAAAAAGTACCTCAAGCAAAAGCAGTATGCCATGGTAAGGTTTAGAAATAAATTGTGGCCTTTGAAGTTGCTGCCTTATGTAACAAAAAAGGAATCAATCCGGTTGTCCACTGGTTGGAACTTGTTTGCTAAAGCAAGTGAATTGCAAGCTGGAGATAGTTTGATGTTCACTTCTTTAGATCTCACTCCTAAGCAATCCATTTGGGACTCTGCTATGTCCATACTTCATTACAACATTGGTGAGCCTGAAAAGCTTAGGAAAATGAATGAGGAAGATCAAGCCACACCACCACCCATGAATAATTCCAATGCAGTCCTTTTCTTCAAGATCATACTTTCAACAACTCTTGAAGACGGAAAACTTAAGATCCCAACCAGTTTCACTAGGAAATATGGTGATGGCCTATCAAACCCAGTGTTTCTTAAGCCTCCGGACGGAACCGAATGGAAAGTAGAATGGACTAAGCATGATGATGGGATTTTTCTTGAACATGGTTGGAATGAGTTTGCTATGTATTACTCTCTAGATCATGGGCATTTGCTGTTTTTTGAATACAAAAACACTTCTCAATTTGAGGTACAAATATGTGAAGTGAGTGGCCTTGAAATAGATTATCCTTTCCATGTCATTCAACAAGAAAATGAAAACATTGAACAGATCAGTCATGAGGCAGATCAAGTGTTCGATGATATGCCTCAAAGCCAAAACAATAGAATGAAATCACCAATGTTTTATCCTCAGCCATCAAACACAACTAGAGAAGTTAGAACAAGCTGCAGTTTGCAAAACTTGCCTCTTATTCACCAAATTAATGGTAATGAGTGTCAAGGAACAAGCTTTGACAAGTCAACATTTGCATCTATTAAGAAAGAATTGGATGAGGATATAGGTGGTAGCACTCCATGTCCAAGAGTGGAACGGTTAAAGCAAACCTTAAACAAAGCTACAACTTCCAAATCTAGACAAAACCCCTCTTTCATGGTTATCATGAAACCTTCCTATGCTAACAGTTACTCAATGAATATCCCTTCAAAATTCACAGCAAAATATTTGAAGAAGCATGCAACAGCCATCCTTGAGGTCCATGATGGGGGGAGAACATGGGCTGTTACTTACAGTTTTGGCAAATTCAGTTCTGGATGGAAGAGATTTGCAAAAGACAATAGTTTGAATGTAGGGGACATTTGTGTTTTTGAGCTCACCAATCCCAAAGACCTTTATTTTAAGGTATCCATAACTCGAATTGAAGAAGAGGAACTTCCGCTATCACAAGTTGAAGGAGACAGAGTCAATTGTTTAGAACCAGGGAAAGTCAATTATGTTGAAAGCAAGAGTGACATTGTGATTAAAGTCAAAAAGGAAACTCAAGAAACTTCAATGGCGACTCCTCCCGGCTTTGAGCCAAATGAAGAAGCCCTGAAAGAAGCTAAGAAATTCACCTCAGAAAATCCATTTTTCATGATCATTATAAAGCCGAGCTTTCTGAGGCAACGCAGACCGAGTATACCAGCTTTCTTCATCAGAAATTACCTCAAAAAGACTCATATTGTGACATTCAAGTTTGGAGAGACACGGTGGCGTATAAAGTTGCTGCGTTACACAAGATACAGAAGTCCAATCACATTATCGAATGGTTGGAGCCTATTTTGTAGAGGAAGTAGATTGAAAGCAGGAGATGTTTGCATCTTTGAGCTAATCAACAAAGAAGATGCAGTGTTTGAAGTTCACTTGTTTAGGTGCCACTCTTAG 2490 0.3839 IPNPESVLVKAEVPIIHQLKGPSHHSLSAITRGCVLDLLKLPKNFSRKYGASLPKPVFLKPPNGTEWKVDWTMHDAAVVFENGWKEFVTYYSIDHGHVLKFEYNGNSKLGVQICDKSGLEIKYPFNVNQQEKVNIIEISDEEVQAFDEMPQRQNNRRKSPESQLNQRNGNQSQGTSFLKSTSTSIEKELDGDRKETQTTSKVTSPLAETSGTLKEAEKFTSKNPFFIINVTKKFLDQSRPNVPIDFVKKYLKQKQYAMVRFRNKLWPLKLLPYVTKKESIRLSTGWNLFAKASELQAGDSLMFTSLDLTPKQSIWDSAMSILHYNIGEPEKLRKMNEEDQATPPPMNNSNAVLFFKIILSTTLEDGKLKIPTSFTRKYGDGLSNPVFLKPPDGTEWKVEWTKHDDGIFLEHGWNEFAMYYSLDHGHLLFFEYKNTSQFEVQICEVSGLEIDYPFHVIQQENENIEQISHEADQVFDDMPQSQNNRMKSPMFYPQPSNTTREVRTSCSLQNLPLIHQINGNECQGTSFDKSTFASIKKELDEDIGGSTPCPRVERLKQTLNKATTSKSRQNPSFMVIMKPSYANSYSMNIPSKFTAKYLKKHATAILEVHDGGRTWAVTYSFGKFSSGWKRFAKDNSLNVGDICVFELTNPKDLYFKVSITRIEEEELPLSQVEGDRVNCLEPGKVNYVESKSDIVIKVKKETQETSMATPPGFEPNEEALKEAKKFTSENPFFMIIIKPSFLRQRRPSIPAFFIRNYLKKTHIVTFKFGETRWRIKLLRYTRYRSPITLSNGWSLFCRGSRLKAGDVCIFELINKEDAVFEVHLFRCHS* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3329 829 SUPERFAMILY DNA-binding pseudobarrel domain 29 118 IPR015300 -
Amo10g3329 829 MobiDBLite consensus disorder prediction 147 214 - -
Amo10g3329 829 ProSiteProfiles B3 DNA-binding domain profile. 572 663 IPR003340 GO:0003677
Amo10g3329 829 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Amo10g3329 829 SUPERFAMILY DNA-binding pseudobarrel domain 568 666 IPR015300 -
Amo10g3329 829 MobiDBLite consensus disorder prediction 198 214 - -
Amo10g3329 829 PANTHER B3 DOMAIN-CONTAINING 699 827 - -
Amo10g3329 829 Gene3D - 346 447 IPR015300 -
Amo10g3329 829 Gene3D - 23 118 IPR015300 -
Amo10g3329 829 Coils Coil 457 477 - -
Amo10g3329 829 SUPERFAMILY DNA-binding pseudobarrel domain 221 306 IPR015300 -
Amo10g3329 829 CDD B3_DNA 571 661 IPR003340 GO:0003677
Amo10g3329 829 SMART B3_2 354 446 IPR003340 GO:0003677
Amo10g3329 829 SMART B3_2 225 313 IPR003340 GO:0003677
Amo10g3329 829 SMART B3_2 573 663 IPR003340 GO:0003677
Amo10g3329 829 SMART B3_2 27 117 IPR003340 GO:0003677
Amo10g3329 829 SMART B3_2 732 828 IPR003340 GO:0003677
Amo10g3329 829 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 345 661 - -
Amo10g3329 829 CDD B3_DNA 224 304 IPR003340 GO:0003677
Amo10g3329 829 Pfam B3 DNA binding domain 225 304 IPR003340 GO:0003677
Amo10g3329 829 Pfam B3 DNA binding domain 355 444 IPR003340 GO:0003677
Amo10g3329 829 Pfam B3 DNA binding domain 573 659 IPR003340 GO:0003677
Amo10g3329 829 Pfam B3 DNA binding domain 732 826 IPR003340 GO:0003677
Amo10g3329 829 Pfam B3 DNA binding domain 37 116 IPR003340 GO:0003677
Amo10g3329 829 SUPERFAMILY DNA-binding pseudobarrel domain 726 827 IPR015300 -
Amo10g3329 829 MobiDBLite consensus disorder prediction 156 184 - -
Amo10g3329 829 ProSiteProfiles B3 DNA-binding domain profile. 732 828 IPR003340 GO:0003677
Amo10g3329 829 CDD B3_DNA 39 115 IPR003340 GO:0003677
Amo10g3329 829 CDD B3_DNA 353 443 IPR003340 GO:0003677
Amo10g3329 829 Gene3D - 206 313 IPR015300 -
Amo10g3329 829 Gene3D - 714 828 IPR015300 -
Amo10g3329 829 Gene3D - 552 664 IPR015300 -
Amo10g3329 829 CDD B3_DNA 731 826 IPR003340 GO:0003677
Amo10g3329 829 PANTHER B3 DOMAIN-CONTAINING 345 661 - -
Amo10g3329 829 PANTHER B3 DOMAIN-CONTAINING 39 307 - -
Amo10g3329 829 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 699 827 - -
Amo10g3329 829 ProSiteProfiles B3 DNA-binding domain profile. 225 325 IPR003340 GO:0003677
Amo10g3329 829 ProSiteProfiles B3 DNA-binding domain profile. 353 446 IPR003340 GO:0003677
Amo10g3329 829 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 39 307 - -
Amo10g3329 829 SUPERFAMILY DNA-binding pseudobarrel domain 348 445 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3329 Amo-Chr10 99007811 99016601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3329 714 828 B3 DNA Binding Superfamily AT3G18990 34.188 5.06e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3329 B3 4.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3329 - - adu:107471690 1003.82