Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3328 ATGTCTTCTACAAGTAAAAAAATGAAAAGAGCCATCAAAACTAAAGACATGGATAAAAGCCCCAATACACAAAACTTGAAGCAGCATGTCAAGATCAAGATTGAAGAAGATAGTCAATCTGAAGAGACAGCAGATATTAAGCAGCCAATAGTTCAATGTGCCAGACCAGATATAGATGTTATTAGAGAAGCAAGGAAGTTCAAGTCGAAAAATCCTTCTTTCGTGATAAAGATTAGGCAAAAGCACCAAGCAGGATCACCAGCAAGTCTTCCAGTTTGCTTCTTCAGAATGTACTTCGAGAACACGAAGCAGTCTGCAACTCTACATGTTGGAAAGAAGCAGTGGCATGCAACATTGATCTATTATCCATATAAGAAGAGTGCCATTATCTCTAATTGGCGCTTGTTCGTTAAAGAAAATAACATAAAAGCCGGAGATGTTTGCATCTTTGAGCTCATTAACAGACAAGATCCAGAGCTTAAGGTTCATATTCGTCGAAGCCATGATTAG 510 0.3824 MSSTSKKMKRAIKTKDMDKSPNTQNLKQHVKIKIEEDSQSEETADIKQPIVQCARPDIDVIREARKFKSKNPSFVIKIRQKHQAGSPASLPVCFFRMYFENTKQSATLHVGKKQWHATLIYYPYKKSAIISNWRLFVKENNIKAGDVCIFELINRQDPELKVHIRRSHD* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3328 169 ProSiteProfiles B3 DNA-binding domain profile. 113 168 IPR003340 GO:0003677
Amo10g3328 169 SUPERFAMILY DNA-binding pseudobarrel domain 67 167 IPR015300 -
Amo10g3328 169 Gene3D - 57 169 IPR015300 -
Amo10g3328 169 PANTHER B3 DOMAIN-CONTAINING 6 167 - -
Amo10g3328 169 MobiDBLite consensus disorder prediction 1 27 - -
Amo10g3328 169 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 167 - -
Amo10g3328 169 CDD B3_DNA 89 166 IPR003340 GO:0003677
Amo10g3328 169 Pfam B3 DNA binding domain 88 167 IPR003340 GO:0003677
Amo10g3328 169 SMART B3_2 74 168 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3328 Amo-Chr10 98994557 98996573 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3328 60 169 REM Transcription Factor Family AT1G49480 30.631 7.65e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3328 B3 3.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3328 - - aip:107622451 275.789