Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3326 ATGGATTCCTCTAACTTTCAAAGAAACAAGAATTCTCTGTCTACTGTGATCCGTTTCTTTAAGATTGTTCTCAGAAAAAGTCTTGATGATGGATATCTTAAAATGCCAAACAAGTTCTGTAGGAAATATGGTGGTGATATGCCAAATCCAGTGAAACTCCAGCCTCCAGATGGCACTGAATGGAGAATAGATTGGACTAATCGTGACGCTGAGATTTTGTTTGAAAATGGTTGGAAAGAGTTTGCTACATTTTACACTTTGGAGAATGGTCATGTGTTGTGGTTTGAGTACAACGGAACTTCTAACATCAAAGTAAACATATTCGACATGACTGCCCTCGAAATTGATTATCCTTCCAATGGCCGAATCGGTGATGACAACTCGGTTGAGATTTTGGATAAACCGCCGCCACGAAGGGGCCGAGGCCAGCCGAAGAAAAAAGTGATAACAGAACCAAAGCAATCACGTGCTTCTACAAGCAAAATAATGAAAAGTGCCATCAAAACTAAAGATAAAGATAAAAATCCCAATACACAAAACTTAAAAGATGGTCAATCTGAAGAGACAGCAGATCTTAAGCTGCCAATAATTCAACGTGCCAGACCAGATATGGATGTTATTAGAGAAGCAAAGAAGTTCAAGTCGAAAAATCCTTCTTTTGTCATCAAGATTAAGCAAAAGCAACAAACAGGATCACCGGCAAATCTTCCAGTTTGTTTCTTCAGAATGTACTTCGAGAACACGAAGCAGTATGCAATTCTACGAGTTGGAAAGAAGCAGTGGCATGCAACATTGATCTATTATCCAGATAGGAAGAATGCCCTTATCTCTAACTGGCGCTTGTTCGTTAAAGAAAATAACTTAAAAGCCGGAAATGTTTGCATCTTTGAGCTCATTAACAGACAAGATCCAGAACTTAAGGTTCATATTCGTGGAAGCCATGATTAG 948 0.3892 MDSSNFQRNKNSLSTVIRFFKIVLRKSLDDGYLKMPNKFCRKYGGDMPNPVKLQPPDGTEWRIDWTNRDAEILFENGWKEFATFYTLENGHVLWFEYNGTSNIKVNIFDMTALEIDYPSNGRIGDDNSVEILDKPPPRRGRGQPKKKVITEPKQSRASTSKIMKSAIKTKDKDKNPNTQNLKDGQSEETADLKLPIIQRARPDMDVIREAKKFKSKNPSFVIKIKQKQQTGSPANLPVCFFRMYFENTKQYAILRVGKKQWHATLIYYPDRKNALISNWRLFVKENNLKAGNVCIFELINRQDPELKVHIRGSHD* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3326 315 ProSiteProfiles B3 DNA-binding domain profile. 259 314 IPR003340 GO:0003677
Amo10g3326 315 MobiDBLite consensus disorder prediction 127 152 - -
Amo10g3326 315 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 311 - -
Amo10g3326 315 SUPERFAMILY DNA-binding pseudobarrel domain 213 313 IPR015300 -
Amo10g3326 315 MobiDBLite consensus disorder prediction 124 192 - -
Amo10g3326 315 Gene3D - 14 112 IPR015300 -
Amo10g3326 315 CDD B3_DNA 18 109 IPR003340 GO:0003677
Amo10g3326 315 Pfam B3 DNA binding domain 20 109 IPR003340 GO:0003677
Amo10g3326 315 Pfam B3 DNA binding domain 236 311 IPR003340 GO:0003677
Amo10g3326 315 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Amo10g3326 315 SMART B3_2 220 314 IPR003340 GO:0003677
Amo10g3326 315 SMART B3_2 19 111 IPR003340 GO:0003677
Amo10g3326 315 SUPERFAMILY DNA-binding pseudobarrel domain 17 118 IPR015300 -
Amo10g3326 315 CDD B3_DNA 236 311 IPR003340 GO:0003677
Amo10g3326 315 PANTHER B3 DOMAIN-CONTAINING 11 311 - -
Amo10g3326 315 Gene3D - 201 313 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3326 Amo-Chr10 98973754 98975778 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3326 19 308 B3 DNA Binding Superfamily AT3G18990 26.748 3.77e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3326 B3 3.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3326 - - aip:107621185 592.808