Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3324 ATGGCTTCCTCTAGTTTCCAAGTGACCTGTTTCTACAAGATTGTTCTCAGACAAAGCCTTGAAGATGGAAATCTTACTAGTTTCATACTTTCATTTGAATTGCAGATCATACCAAAAACGTTCAGTATGGAATTTGGTGATGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTGAGTATGATGGTGCCATTCTATTTGAAAATGGTTGGAAAGAATTTGCCTCATATTACTCTTTGGATCATGGCCATATGCTGTGGTTTGAGTACAATGAAACTTCTAACATTCAAGTAAACATTTTTGACATGACTTGCCTTGAAATAGACTATCCTTCCTTGGATCACATCAGCGATGACGATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTCTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTGAAGGAGTGAAATGGTGCCCCAAAATAGACTATCCTTCCAAGGACCACATTGATGATGGCAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCAAAACTAAAAAAGTGAAATGGCGCGCTGAAATACAATATCCTTCCAAGCACCACATCGATGAGGACAGCATGGCTAAGGTCAGGGACGGATTTATATTGGCAAGTGCCCCCATTGAGTTTTAA 807 0.4263 MASSSFQVTCFYKIVLRQSLEDGNLTSFILSFELQIIPKTFSMEFGDGVPNPVYLKPPDGTAWKIDWSEYDGAILFENGWKEFASYYSLDHGHMLWFEYNETSNIQVNIFDMTCLEIDYPSLDHISDDDSIEILNELPPRGWPRKTEKAAPKTPSASTSKMFTSSAKTEGVKWCPKIDYPSKDHIDDGNMVKVENEPPRRGRGRPRKTEKAAPKTPSPCTSKMFTSSAKTKKVKWRAEIQYPSKHHIDEDSMAKVRDGFILASAPIEF* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3324 268 CDD B3_DNA 36 111 IPR003340 GO:0003677
Amo10g3324 268 PANTHER B3 DOMAIN-CONTAINING 8 205 - -
Amo10g3324 268 MobiDBLite consensus disorder prediction 214 228 - -
Amo10g3324 268 SMART B3_2 24 113 IPR003340 GO:0003677
Amo10g3324 268 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Amo10g3324 268 MobiDBLite consensus disorder prediction 136 161 - -
Amo10g3324 268 SUPERFAMILY DNA-binding pseudobarrel domain 27 113 IPR015300 -
Amo10g3324 268 Gene3D - 4 114 IPR015300 -
Amo10g3324 268 Pfam B3 DNA binding domain 36 111 IPR003340 GO:0003677
Amo10g3324 268 MobiDBLite consensus disorder prediction 184 211 - -
Amo10g3324 268 MobiDBLite consensus disorder prediction 184 228 - -
Amo10g3324 268 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3324 Amo-Chr10 98970263 98971183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3324 11 238 B3 DNA Binding Superfamily AT3G18990 25.301 6.13e-17 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3324 B3 1.4e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3324 - - ahf:112700056 392.119