Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3323 ATGAAGACTTTACATACTAATGTGTGTCACCTTATTGTTATTATGGTTGCTAACACCAGGTTCATAACATTGCAGAAGTTACCAATAAGCACTGAAAAATATGGTTCTGACCTATCAAACCCATTGTATCTTAAGCCTCCAGATGGTACTGAATGGAGAGTAGAGTGGACTAATCATAATGGTGAAATTTTGTTTAAAAACGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATTTGTTATGGTTTGAGTGCAATATTGGAACATCTCACATGAAAGTAAACATATTTGACATGAATTGCCTCCAAATAGAGTATCCTGCTAATGATCAGATCAAAGAGCAGCTGACAGGCAGGGGTCAGCAGCCGATGAAAAAGCAAGAAGAACAAAAAACTAGAGATATGGATAACAGTCGCAACACCCAAAACATGAGACTTAACGAGGGACCGCAGAAGAAAAGATTGAATGAATCATTGCCAAGAGAAGTCTGGGACCAACCGAGGAAAAAACTAAGAGCACTAGTGTCATCTGGTTCTAAAGATAGACACTTGGAAAATGACACACAAATTAAGGATGTAGAAAGAAGCTTCAATTCGCACGGTATTAAATCTAAAGAAAAAAATCATGAGATGCCAGTGTCTGTCAATCAAAATTCTAATGGTAAAAGGAATAGAAGAAGAAAAGATTATGAATCTCCTGTTATGCCCTGTCCTACAAGACTTGAATCTCTGAAAGAAGCTAAGAAGTTTAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAACGCAACGGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAATTCTACAGAAAGTATTTTGAAAATAATCCACAAAATGCAAATATAAGGTTTGGAAAGAAGTTGTTCCCTGTTAAATTGATCTATAGGCCATCATCATGTGTTGCCTTTATCTCTGCTGGTTGGAACCTTTTTGCTCGAGCTATTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCATCAATAGAAAAGATCCGGTGCTTGATGTTCATATTTGTCGTCGACAACGCCGCGAGTCACTTAAACCAGTGACTCATGGGATTCAACTCTTCAAAGAAGTTAAGGAGCTCAACTCACATAATCCCTCTTTTATGGTCAAGATAAGAGACAGTGATCCAAGGAGATCAAGGCCTAACTTATCAGCTATCTTCTACAGAAAGTATTTTAAAAAGAATCAGCAGGATGTAAAGTTACAGTTCGGAAAGGAATCATGGCCTGCTACGATAATCTACAATCCGACGTCGAAAAACAGCTTTATTTCGGCTGGTTGGAGTTCTTTTGCTAGAGCAAGTAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAGCTCATCAATGAAAAAGATCTATTTGATGTTCATATTTGTAGAGCCCAATGCTAG 1437 0.3765 MKTLHTNVCHLIVIMVANTRFITLQKLPISTEKYGSDLSNPLYLKPPDGTEWRVEWTNHNGEILFKNGWKEFVAYYSLDHGHLLWFECNIGTSHMKVNIFDMNCLQIEYPANDQIKEQLTGRGQQPMKKQEEQKTRDMDNSRNTQNMRLNEGPQKKRLNESLPREVWDQPRKKLRALVSSGSKDRHLENDTQIKDVERSFNSHGIKSKEKNHEMPVSVNQNSNGKRNRRRKDYESPVMPCPTRLESLKEAKKFKWEKPSFIIKITQRSQTRAPCYFSTKFYRKYFENNPQNANIRFGKKLFPVKLIYRPSSCVAFISAGWNLFARAIKLQAGDVCLFKLINRKDPVLDVHICRRQRRESLKPVTHGIQLFKEVKELNSHNPSFMVKIRDSDPRRSRPNLSAIFYRKYFKKNQQDVKLQFGKESWPATIIYNPTSKNSFISAGWSSFARASKLEAGDVCVFELINEKDLFDVHICRAQC* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3323 478 ProSiteProfiles B3 DNA-binding domain profile. 301 355 IPR003340 GO:0003677
Amo10g3323 478 SUPERFAMILY DNA-binding pseudobarrel domain 376 476 IPR015300 -
Amo10g3323 478 CDD B3_DNA 38 101 IPR003340 GO:0003677
Amo10g3323 478 Pfam B3 DNA binding domain 270 355 IPR003340 GO:0003677
Amo10g3323 478 Pfam B3 DNA binding domain 398 476 IPR003340 GO:0003677
Amo10g3323 478 Pfam B3 DNA binding domain 32 101 IPR003340 GO:0003677
Amo10g3323 478 SUPERFAMILY DNA-binding pseudobarrel domain 31 110 IPR015300 -
Amo10g3323 478 CDD B3_DNA 258 353 IPR003340 GO:0003677
Amo10g3323 478 MobiDBLite consensus disorder prediction 204 238 - -
Amo10g3323 478 MobiDBLite consensus disorder prediction 127 141 - -
Amo10g3323 478 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 362 476 - -
Amo10g3323 478 MobiDBLite consensus disorder prediction 119 160 - -
Amo10g3323 478 CDD B3_DNA 381 475 IPR003340 GO:0003677
Amo10g3323 478 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Amo10g3323 478 PANTHER B3 DOMAIN-CONTAINING 362 476 - -
Amo10g3323 478 SMART B3_2 383 477 IPR003340 GO:0003677
Amo10g3323 478 SMART B3_2 260 355 IPR003340 GO:0003677
Amo10g3323 478 SMART B3_2 21 103 IPR003340 GO:0003677
Amo10g3323 478 SUPERFAMILY DNA-binding pseudobarrel domain 254 354 IPR015300 -
Amo10g3323 478 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 31 353 - -
Amo10g3323 478 PANTHER B3 DOMAIN-CONTAINING 31 353 - -
Amo10g3323 478 Gene3D - 242 356 IPR015300 -
Amo10g3323 478 Gene3D - 367 477 IPR015300 -
Amo10g3323 478 ProSiteProfiles B3 DNA-binding domain profile. 382 477 IPR003340 GO:0003677
Amo10g3323 478 Gene3D - 12 104 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3323 Amo-Chr10 98966175 98969289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3323 373 468 B3 DNA Binding Superfamily AT3G18990 31.959 1.14e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3323 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3323 - - adu:107471893 766.918