Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3322 AAAATGCCAAACAAGTTCCGTAGGAAATATGGTGGAGATATGCCAAATCCAGTGAAACTCCTGCCTCCAGATGGCACTGAGTGGAGAATAGATTGGACTAATCGTGATGGTGAGATTTTGTTTGAAAACGGTTGGAAAGAGTTTGCTACATTTTACACCTTGGAGAATGGTCATGTGTTGTGGTTTGAGTACAACGGAACTTCTAACATCAAAGTAAACATATTCGACATGACTGCCCTCGAAATTGATTATCCTTCCAATGGTCGAATCGGTGATGACAACTCGGTTGAGATTTTGGATGAACCGCCGCCACGAAGGGACCGAGGCCGGCCGAAGAAAAAAGTGATAGCAGAACCAAAGCAATCACGTGCTTCTGCAAGCAAAAAAATGAAAAGTGCCATCAAAACTAAAGATAAAGATAAAAATCCCAATACACAAAACTTGAAGCTGCATGTCGAGAATGAAAAAGATGGTCAATCTGAAGAGACAGCAGATCTTAAGCTGCCAATAATTCAACGTGCCAGACCAGATATGGATGTTGTTAGAGAAGCAAAGAAGTTCAAGTCGAAAAATCCTTCTTTTGTCATCAAGATTAAGCAAAAGCACCAAACAGGATTACCAGCAAATCTTCCAGTTTGTTTCTTCAGAATGTACTTCGAGAACACGAAGCAGTATGCAATTCTACGAGTTGGAAAGAAGCAGTGGCATGCAACATTGATCCATTATCCAAATAGGAAGAATGCCCTTATCTCTCATTGGCGCTTGTTCGTTGAAGAAAATAACTTAAAAGCCGGAGATGTTGGTATCTTTGAGCTCGTTAACAGACAAGGTCCAGAACTTAAGGTTCATATTCGTCGAAGCCATGATTAG 870 0.408 KMPNKFRRKYGGDMPNPVKLLPPDGTEWRIDWTNRDGEILFENGWKEFATFYTLENGHVLWFEYNGTSNIKVNIFDMTALEIDYPSNGRIGDDNSVEILDEPPPRRDRGRPKKKVIAEPKQSRASASKKMKSAIKTKDKDKNPNTQNLKLHVENEKDGQSEETADLKLPIIQRARPDMDVVREAKKFKSKNPSFVIKIKQKHQTGLPANLPVCFFRMYFENTKQYAILRVGKKQWHATLIHYPNRKNALISHWRLFVEENNLKAGDVGIFELVNRQGPELKVHIRRSHD* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3322 289 PANTHER B3 DOMAIN-CONTAINING 1 287 - -
Amo10g3322 289 Gene3D - 175 289 IPR015300 -
Amo10g3322 289 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 287 - -
Amo10g3322 289 SUPERFAMILY DNA-binding pseudobarrel domain 187 287 IPR015300 -
Amo10g3322 289 MobiDBLite consensus disorder prediction 94 119 - -
Amo10g3322 289 Pfam B3 DNA binding domain 2 76 IPR003340 GO:0003677
Amo10g3322 289 Pfam B3 DNA binding domain 210 287 IPR003340 GO:0003677
Amo10g3322 289 MobiDBLite consensus disorder prediction 131 162 - -
Amo10g3322 289 SMART B3_2 194 288 IPR003340 GO:0003677
Amo10g3322 289 SMART B3_2 1 78 IPR003340 GO:0003677
Amo10g3322 289 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Amo10g3322 289 SUPERFAMILY DNA-binding pseudobarrel domain 2 85 IPR015300 -
Amo10g3322 289 MobiDBLite consensus disorder prediction 91 162 - -
Amo10g3322 289 CDD B3_DNA 210 286 IPR003340 GO:0003677
Amo10g3322 289 CDD B3_DNA 2 76 IPR003340 GO:0003677
Amo10g3322 289 ProSiteProfiles B3 DNA-binding domain profile. 233 288 IPR003340 GO:0003677
Amo10g3322 289 Gene3D - 1 79 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3322 Amo-Chr10 98943599 98944689 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3322 1 289 B3 DNA Binding Superfamily AT3G18990 25.545 1.19e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3322 B3 7.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3322 - - aip:107621185 540.036