Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3321 ATGGCTTCCTCTAGATTCCAAAAAAACAAGCGTTCTCGTTCCTCTGTGATCCGTTTCTTCAAAATTGTTCTCAGACATAGCCTTGAAGATGGAAAGCTTAAGGTACCAAAAATGTTCAATATGAAACATGGTCGCGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTGAGTATGATGGTGCCATTCTATTTGAAAATGGTTGGAAAGAATTTGCTTCGTATTACTCTTTGCATAATGGCCATCTGCTGTGGTTTGAGTACAATCAAACTTCTAACATTGTAGTATACATTTTTGACATGACTTGCCTTGAAATAGACTATCCTTCCTTGGATCACGTCAGCGATGACGATTCGATTGAGATCTTGAATGAACTGCCCCCACGAGGCTGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTCTACAAGCAAAATGGTCACAAGTTCTGCCAAAACTAAAGTAGTGAAAGGGTGCCCTGAAAGAAACTATCCTTCCAAGGACCACATTGATGATGTCAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCAGAGGCCGGCCGAGGAAAACAGAGAAAGCAGCACGAAACAAACCATCTCCTTGTACAAGCAAAAAGGTCACAAGTTCTGCCAAGAATAGAGTAGTGAAACGGTGCCCTGAAATAGGCTATCCTTCCAAGAACCACATTAACAATGACAACATGGTTAAGGTTGTGAATGAACCACCACGAAGGGGCCGAGGCCGGCCGAGAAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTGTACAAGTAAAAGGTTCACAAGTTCTGCCAATACTAGAATGGTGAAATGGTGCCCTGAGATAGACTATCCTTCCAAGGACCACATTGATGATCACAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAAAATTGAAAGCAGCAGTAGAAGTATCATCTCCTTCTACAAGTAAAACATTGTGGAGTTCTGTCAAAACTGGAGATGTAGAGAAGGGCCCTGATATGCTGTGTTGCAAGAATGAAGAAGCTAGTCAATCTGAAGAGACAGGTCTTAAGATGCCAACAATTCCAAGTGCCAGTGTTGATCCTTATAGTATGTAA 1179 0.4368 MASSRFQKNKRSRSSVIRFFKIVLRHSLEDGKLKVPKMFNMKHGRGVPNPVYLKPPDGTAWKIDWSEYDGAILFENGWKEFASYYSLHNGHLLWFEYNQTSNIVVYIFDMTCLEIDYPSLDHVSDDDSIEILNELPPRGWPRKTEKAAPKTPSASTSKMVTSSAKTKVVKGCPERNYPSKDHIDDVNMVKVENEPPRRGRGRPRKTEKAARNKPSPCTSKKVTSSAKNRVVKRCPEIGYPSKNHINNDNMVKVVNEPPRRGRGRPRKTEKAAPKTPSACTSKRFTSSANTRMVKWCPEIDYPSKDHIDDHNMVKVENEPPRRGRGRPRKKLKAAVEVSSPSTSKTLWSSVKTGDVEKGPDMLCCKNEEASQSEETGLKMPTIPSASVDPYSM* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3321 392 SMART B3_2 19 111 IPR003340 GO:0003677
Amo10g3321 392 PRINTS High mobility group protein (HMGY) signature 257 269 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Amo10g3321 392 PRINTS High mobility group protein (HMGY) signature 310 329 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Amo10g3321 392 MobiDBLite consensus disorder prediction 174 201 - -
Amo10g3321 392 PANTHER B3 DOMAIN-CONTAINING 9 226 - -
Amo10g3321 392 SMART AT_hook_2 321 333 IPR017956 GO:0003677
Amo10g3321 392 SMART AT_hook_2 259 271 IPR017956 GO:0003677
Amo10g3321 392 SMART AT_hook_2 197 209 IPR017956 GO:0003677
Amo10g3321 392 MobiDBLite consensus disorder prediction 254 282 - -
Amo10g3321 392 MobiDBLite consensus disorder prediction 149 164 - -
Amo10g3321 392 MobiDBLite consensus disorder prediction 255 271 - -
Amo10g3321 392 CDD B3_DNA 18 109 IPR003340 GO:0003677
Amo10g3321 392 MobiDBLite consensus disorder prediction 336 350 - -
Amo10g3321 392 SUPERFAMILY DNA-binding pseudobarrel domain 14 111 IPR015300 -
Amo10g3321 392 MobiDBLite consensus disorder prediction 134 229 - -
Amo10g3321 392 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Amo10g3321 392 Pfam B3 DNA binding domain 19 109 IPR003340 GO:0003677
Amo10g3321 392 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 226 - -
Amo10g3321 392 Gene3D - 12 112 IPR015300 -
Amo10g3321 392 PRINTS AT-hook-like domain signature 197 207 IPR017956 GO:0003677
Amo10g3321 392 PRINTS AT-hook-like domain signature 257 268 IPR017956 GO:0003677
Amo10g3321 392 PRINTS AT-hook-like domain signature 319 329 IPR017956 GO:0003677
Amo10g3321 392 MobiDBLite consensus disorder prediction 315 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3321 Amo-Chr10 98940821 98942143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3321 7 131 B3 DNA Binding Superfamily AT4G01580 37.209 1.12e-17 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3321 B3 7.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3321 - - ahf:112717083 776.163