Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3320 ATGAAAACTTTACATGCTAATGTGCGTCACCATATTGTTATTACGGTTGCTAACATCAGGTTCATAACATTGCAGAAGTTAACAAAAAAGTTCACTACACAATATGGTTCTGTCGTATCAAACCCATTGTATCTTAAGCCTCGAGATGGTATTGAATGGAAAGTCTATTGGACTAAACATGATGGTGCAATTTTGTTTAAAAAGGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATTTGTTATGGTTTGAGTACAATATTGGAACATCTTACATTGAAGTACGCATATATGACATGAGTTGCCATGAAATAAAGTATCCTGCCAATGATCAGATCAAAGAGCAGTCGCCATGCAGGGGCCAGCAGCCGGTGAAAAGGCCAAAAGAACCAAAAATTATAGATGTGGATAGCAGTCCCAACACTCAAAACATGAGACTTAACGAGGGACAACAGAAGAAAAGATTGAATGAACCACGGTCAGGAAGAGTCCGGAGCCAACCGAGAAAAAAAATGAGAGCACTAGTGTCATCTGCTTCTAAAAGTAGACAGTTGGAAGATGACACACAAATCAGGAATGTTGAAAGAAGCCTCAATTCACACGATATAAAATCCAATGAGAAAAACTATGAGATGCCAGTGTCTGTCAATCGAGATTCTAATGGTAAAAGGAACAGAAGAAGAAAAGGTTCTGAATCTCCTGTTATGCCCTGTCTTACAAGACTTGAATCTCTGAAAGAAGCTAAGAAGTTTAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAACGCAACGGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAATTCTTCAGAAAGTATTTTGAAAATAATCCACAAAATGCAAATATAAGATTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTACAGGCCATCATCATGTGTTGCCTTTATATCTGCTGGTTGGAACCTTTTTGCTCGAGCTAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCATCAATAGAAAGGATCCGGAGCTTAACTCACAGAATCCCTCTTTCATGGTAAAGATAAAAGACAGTGATCCAAGGAGATCAAGGCCTAACTTATCAGCTATCTTTTACAGAAAGTATTTTAAAAAGAATCAGCAGGATGTAAAATTACAGTTYGGAAAGGAGTCGTGGCCTGCTACAATTATCTACAATCCGTCATCGAAAAACAGCTTTATTTCGGCTGGTTGGAGCTCTTTTGCTAGAGCAAGTAAATTAGAAGTTGGAGATGTTTGTGTTTTTGAGCTCATCAATGGAAAAGATCTGTTTGATGTTCATATCTGTAGAGCCCAATGCTAG 1353 0.3806 MKTLHANVRHHIVITVANIRFITLQKLTKKFTTQYGSVVSNPLYLKPRDGIEWKVYWTKHDGAILFKKGWKEFVAYYSLDHGHLLWFEYNIGTSYIEVRIYDMSCHEIKYPANDQIKEQSPCRGQQPVKRPKEPKIIDVDSSPNTQNMRLNEGQQKKRLNEPRSGRVRSQPRKKMRALVSSASKSRQLEDDTQIRNVERSLNSHDIKSNEKNYEMPVSVNRDSNGKRNRRRKGSESPVMPCLTRLESLKEAKKFKWEKPSFIIKITQRSQTRAPCYFSTKFFRKYFENNPQNANIRFGKKLFPVKLIYRPSSCVAFISAGWNLFARASKLQAGDVCLFKLINRKDPELNSQNPSFMVKIKDSDPRRSRPNLSAIFYRKYFKKNQQDVKLQFGKESWPATIIYNPSSKNSFISAGWSSFARASKLEVGDVCVFELINGKDLFDVHICRAQC* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3320 450 MobiDBLite consensus disorder prediction 188 211 - -
Amo10g3320 450 CDD B3_DNA 259 361 IPR003340 GO:0003677
Amo10g3320 450 SMART B3_2 261 354 IPR003340 GO:0003677
Amo10g3320 450 SMART B3_2 21 104 IPR003340 GO:0003677
Amo10g3320 450 SMART B3_2 355 449 IPR003340 GO:0003677
Amo10g3320 450 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
Amo10g3320 450 ProSiteProfiles B3 DNA-binding domain profile. 354 449 IPR003340 GO:0003677
Amo10g3320 450 SUPERFAMILY DNA-binding pseudobarrel domain 348 448 IPR015300 -
Amo10g3320 450 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 344 448 - -
Amo10g3320 450 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 17 343 - -
Amo10g3320 450 ProSiteProfiles B3 DNA-binding domain profile. 10 104 IPR003340 GO:0003677
Amo10g3320 450 CDD B3_DNA 29 102 IPR003340 GO:0003677
Amo10g3320 450 Pfam B3 DNA binding domain 368 448 IPR003340 GO:0003677
Amo10g3320 450 Pfam B3 DNA binding domain 27 90 IPR003340 GO:0003677
Amo10g3320 450 Pfam B3 DNA binding domain 272 348 IPR003340 GO:0003677
Amo10g3320 450 MobiDBLite consensus disorder prediction 139 153 - -
Amo10g3320 450 SUPERFAMILY DNA-binding pseudobarrel domain 257 343 IPR015300 -
Amo10g3320 450 CDD B3_DNA 353 447 IPR003340 GO:0003677
Amo10g3320 450 Gene3D - 347 449 IPR015300 -
Amo10g3320 450 Gene3D - 243 346 IPR015300 -
Amo10g3320 450 MobiDBLite consensus disorder prediction 116 237 - -
Amo10g3320 450 MobiDBLite consensus disorder prediction 154 168 - -
Amo10g3320 450 Gene3D - 9 105 IPR015300 -
Amo10g3320 450 PANTHER B3 DOMAIN-CONTAINING 344 448 - -
Amo10g3320 450 PANTHER B3 DOMAIN-CONTAINING 17 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3320 Amo-Chr10 98937444 98940119 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3320 352 440 B3 DNA Binding Superfamily AT3G18990 32.222 7.50e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3320 B3 7.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3320 - - adu:107471893 832.787