Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3314 ATGGCACTCAATGGAAAGTACATTAGACTCAGCATGATGATAAGATTTTATTTGAAAAGGGTTGGAAAGAGTTTGCTGCTTATTACTCTCTTGATCATGGTACACATGCTTGACATGAGTGGCCTTGAAATACATTATCATTTCAATAACTGGATCGACAATGATTCGTCAGCATGTATCTCAAATGGTTGGTGGACTTTTAGTGTTGAGAATGATTTAAAAGTTGGAGATGTTTGTGTCTTTGAGCTCATTAGTGGAGAAAATCCAGTGCTTGATGCTCATATTTATAGAGCCAATGGTTAA 303 0.363 MALNGKYIRLSMMIRFYLKRVGKSLLLITLLIMVHMLDMSGLEIHYHFNNWIDNDSSACISNGWWTFSVENDLKVGDVCVFELISGENPVLDAHIYRANG* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3314 100 ProSiteProfiles B3 DNA-binding domain profile. 1 99 IPR003340 GO:0003677
Amo10g3314 100 SUPERFAMILY DNA-binding pseudobarrel domain 30 99 IPR015300 -
Amo10g3314 100 CDD B3_DNA 19 97 IPR003340 GO:0003677
Amo10g3314 100 Pfam B3 DNA binding domain 32 97 IPR003340 GO:0003677
Amo10g3314 100 Gene3D - 8 99 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3314 Amo-Chr10 98875424 98876075 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3314 58 99 B3 DNA Binding Superfamily AT3G18990 47.619 1.34e-07 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3314 B3 5.9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3314 - - aip:107621531 83.9593