Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3309 ATGGCTTCAACTAGCTTCCAACCAAAGAACAAGTCTCCTTCCACTGTGATCAGCTTCTTCAAGATTCTTCTCAGTAAAAGTCTCCAAGCTGGAACTCTTAAGATACCAAGAAAGTTCAGTAGGATATATGGTGGTGGTGTGCCGAATCCAGTGTATCTTAAGCTTCCAGACGGCACTCAATGGAAAATAGATTGGACTAATCATAATGGTGAGATTATATTTGAAAATGGTTGGAAAGAGTTTGCTGCATATTACTCTCTAGATCAAGGGCACTTGTTGTGGTTTGACTATAAAAAAACTTCTCTTTTTGAGGTTCACATATTTGACATGAGTTGCCTTGAAATAAACTATCCTCCCAATGATCACACTGATGATGATTGTGTTGAGATTTTAAATAAGCCCCCATCACCACTCCGGGGGGGTCTAAGGAAGCGGTCGGTAGCACCATTATCGACTCCTTCTAAAACGAAACGATTGAGAAGTGCTACAAAATCTAGAGATGTCGAAAGAGGTAGCCAATCTAAGGATACAAGCCTTGAAATGCCAGTATTTTCATCTTCCCGGCAAGATTTCCTTGATTTCTCTCCTGGGACCAGTGGGTTTAAGGCTCTGAAAGAAGCTGAGAAGTTCAGCTCTGAAAATCCCTTTTTCATTGTCAAGATAAGGCAAGCTATACGTTCAAACCGTAATTTTCCAGCTTCCTTTTTCATAAAATACTTTAAAAATGAGGTGCAGAAAGTAAAGATAAGGTTTGAGGGGAACTTGTTTCCTGCAAAGTTGCGGTATTATCGACAAAATTCTACTGCCTTTATCTCTTCTGGATGGCTCCAATTTGCTCAAGCAAGTAAATTACAACCTGGGGATGTTACTGTGTTTGAGCTCGTCGATAGAGATGATCCGGTGTTTGAAACTCATATTTATAGAGCCAAAGCTTTCAAGTCATGGTCCTGTGGCTTTCAATCTCTGAAAGCAGCTCGGAATTTCAAGTCAGAAAATCCCTCTTTCATGGTCAAGATCACACAAACAAACCTACCAAGAACAAATGCTGTCATACCAGTTCCCTTCTTCACAAAGTATTTTGCAAGGAAGAAGCCGAATATACAGATAAAGTTGAGAAACAAGTTGTTGCCAGCAAAGTTGCTCTATTATCCATCATCTTCTGCTGCCTATATCTCTGCCGGTTGGCAAGCTTTTGTTGGTGCCAGTAATTTAAAGGCTGGAGATGTTTGTGTCTTTGAGCTTGTCAATGAAAAAGATCGAGTGCTCGATGTTATGAATCTAATCCATGAAAATGCAACTCATTTCTTTCCAATCAAACACCCCATGAGATATATGCATAAAAGTTTTCCAAAATGGATTGTTAAATGCTGCTTCTTGTGTCCGTGCATTTATTTGATCAAGAGATTAGAGAAATTCAGTTTATTAATATCAACTAACCAACAAAAGATAAAAGCTGCACCAACAGCTTCAACTTACACCGGGCCCACTAAAGACAAATGTCAGAAGATACCAAACAAGTTCACTAGCAAATATGGTGGTGGTGTGAAAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTCAATGGAAAGTACAATGGACTCAGCATGATGGTGACATTTTATTTGAAAAGGGTTGGAAAGAATTTGCTGCATATTACTCTCTGGATCATGGTCACTTGTTGCGATTTGAGTTCAATGGAACTTCTTGTTTTGAGGTACACATATTTGACATGAGTGGCCTTGAAATACACTATCCTTTCAATAACCGGATCGACAATGATTCGGTTGAGACTTTGAATGAGCTACCACCACAATGTTGGGGAAGAGAGCAGAAAAGATTGAAAACACCATTATCATTATCATTGCCTTTTACAAGTAAGCAATTGAGAATTGCCACAGAAACTAGAGATGTGGAAGGAGGTAGTCAACCTGAAGAGAAAAACATTGAGATGCCAATAATTCCATCTGTCATTCATCGTTCGGATGTTTTTGAGCCTGGGACCTGTGGTTTTCGATGCCTGGAAGAAGCTCAGAAGTTCAACTCAGAAAATCCCTCTTTCATGATCAAGCTAGGGAAGAGTAATCTACAGAGATCAAGGGCTAATTTTAAAGCTTCCTTCTACATAAAGTATTTTGAAAACAAGGAGCAGAATGTAGAGATACGGTACGAAGGCAAGCTGTGGCCTGCAAAGTTGCTCTGTTATCCCGCAGCAGCAGCTGCCTATATCTCGAATGGTTGGCGGCCTTTTAGTCTTGAGAATGATTTAAAAGTTGGAGATGTTTGTGTCTTTGAGCTCATCAGTGGAGAAAACCCAGTGCTTGATGCTCATATTTATAGAGCCAATGGTTAA 2352 0.3988 MASTSFQPKNKSPSTVISFFKILLSKSLQAGTLKIPRKFSRIYGGGVPNPVYLKLPDGTQWKIDWTNHNGEIIFENGWKEFAAYYSLDQGHLLWFDYKKTSLFEVHIFDMSCLEINYPPNDHTDDDCVEILNKPPSPLRGGLRKRSVAPLSTPSKTKRLRSATKSRDVERGSQSKDTSLEMPVFSSSRQDFLDFSPGTSGFKALKEAEKFSSENPFFIVKIRQAIRSNRNFPASFFIKYFKNEVQKVKIRFEGNLFPAKLRYYRQNSTAFISSGWLQFAQASKLQPGDVTVFELVDRDDPVFETHIYRAKAFKSWSCGFQSLKAARNFKSENPSFMVKITQTNLPRTNAVIPVPFFTKYFARKKPNIQIKLRNKLLPAKLLYYPSSSAAYISAGWQAFVGASNLKAGDVCVFELVNEKDRVLDVMNLIHENATHFFPIKHPMRYMHKSFPKWIVKCCFLCPCIYLIKRLEKFSLLISTNQQKIKAAPTASTYTGPTKDKCQKIPNKFTSKYGGGVKNPVYLKPPDGTQWKVQWTQHDGDILFEKGWKEFAAYYSLDHGHLLRFEFNGTSCFEVHIFDMSGLEIHYPFNNRIDNDSVETLNELPPQCWGREQKRLKTPLSLSLPFTSKQLRIATETRDVEGGSQPEEKNIEMPIIPSVIHRSDVFEPGTCGFRCLEEAQKFNSENPSFMIKLGKSNLQRSRANFKASFYIKYFENKEQNVEIRYEGKLWPAKLLCYPAAAAAYISNGWRPFSLENDLKVGDVCVFELISGENPVLDAHIYRANG* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3309 783 CDD B3_DNA 503 577 IPR003340 GO:0003677
Amo10g3309 783 ProSiteProfiles B3 DNA-binding domain profile. 334 430 IPR003340 GO:0003677
Amo10g3309 783 SUPERFAMILY DNA-binding pseudobarrel domain 501 579 IPR015300 -
Amo10g3309 783 MobiDBLite consensus disorder prediction 136 179 - -
Amo10g3309 783 Gene3D - 486 580 IPR015300 -
Amo10g3309 783 Gene3D - 13 112 IPR015300 -
Amo10g3309 783 Gene3D - 671 782 IPR015300 -
Amo10g3309 783 Gene3D - 199 312 IPR015300 -
Amo10g3309 783 Gene3D - 319 429 IPR015300 -
Amo10g3309 783 SUPERFAMILY DNA-binding pseudobarrel domain 680 782 IPR015300 -
Amo10g3309 783 CDD B3_DNA 333 418 IPR003340 GO:0003677
Amo10g3309 783 SUPERFAMILY DNA-binding pseudobarrel domain 210 310 IPR015300 -
Amo10g3309 783 SMART B3_2 687 782 IPR003340 GO:0003677
Amo10g3309 783 SMART B3_2 487 579 IPR003340 GO:0003677
Amo10g3309 783 SMART B3_2 335 428 IPR003340 GO:0003677
Amo10g3309 783 SMART B3_2 216 310 IPR003340 GO:0003677
Amo10g3309 783 SMART B3_2 19 111 IPR003340 GO:0003677
Amo10g3309 783 MobiDBLite consensus disorder prediction 160 174 - -
Amo10g3309 783 ProSiteProfiles B3 DNA-binding domain profile. 724 782 IPR003340 GO:0003677
Amo10g3309 783 Pfam B3 DNA binding domain 19 109 IPR003340 GO:0003677
Amo10g3309 783 Pfam B3 DNA binding domain 338 420 IPR003340 GO:0003677
Amo10g3309 783 Pfam B3 DNA binding domain 500 577 IPR003340 GO:0003677
Amo10g3309 783 Pfam B3 DNA binding domain 695 780 IPR003340 GO:0003677
Amo10g3309 783 Pfam B3 DNA binding domain 229 309 IPR003340 GO:0003677
Amo10g3309 783 ProSiteProfiles B3 DNA-binding domain profile. 214 310 IPR003340 GO:0003677
Amo10g3309 783 SUPERFAMILY DNA-binding pseudobarrel domain 330 421 IPR015300 -
Amo10g3309 783 CDD B3_DNA 215 308 IPR003340 GO:0003677
Amo10g3309 783 CDD B3_DNA 18 109 IPR003340 GO:0003677
Amo10g3309 783 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 320 425 - -
Amo10g3309 783 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Amo10g3309 783 PANTHER B3 DOMAIN-CONTAINING 320 425 - -
Amo10g3309 783 PANTHER B3 DOMAIN-CONTAINING 498 781 - -
Amo10g3309 783 PANTHER B3 DOMAIN-CONTAINING 13 309 - -
Amo10g3309 783 CDD B3_DNA 685 780 IPR003340 GO:0003677
Amo10g3309 783 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 498 781 - -
Amo10g3309 783 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 309 - -
Amo10g3309 783 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
Amo10g3309 783 ProSiteProfiles B3 DNA-binding domain profile. 486 579 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3309 Amo-Chr10 98741021 98745866 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3309 492 782 B3 DNA Binding Superfamily AT3G18990 28.313 3.52e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3309 B3 3.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3309 - - aip:107621531 704.901