Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3308 ATGGAATCTGTTACCTCAGCCCAGAACACCAACCAACCCAAGGAAACACCGTTCCCACTATTCCCACCTGGAATCCCAATCCCTACGACAACCATAGAAAAAGCCGTAACGGCCACCACCACCGCCACCGCCACCAACGTTCCAACGCCGTTTCTCATAATACCCAAACACGAACCCGTTGAAGAATGCACCACCCCCATCCCTACCTCTAACAATCAAGACGTCAAACCTATATTCCCAAATGCCCCTCGCCGCGAAACCCTACCTGCACCTGTAACTGCACCTGCAACTGCACCTCCTTCAGCCACCTCCTGCGACCCAAGCGACAACGCAAATGGCCTATACGAAGAGTTCAACCGAGTCTCTCAGCTCTTCCGTACCGCTTTCGCCGAGCAGCAGCAGCACCAGCTTCGAGCATCTCAGCAAATGGATTCCTCAAACGACCTCGTGTTGGACCCTAATTCGGGGGCAATTGTTCCTGTGCCTCCTCCGCAGGAATACGGGGGTAATTGGAATGGAAACGACGCCGCTGGGTACGAGGGTTCTGCTTCGTCTAGCGGGGGGAACATGACGCTGGCGAAGAGGAACAGGCTGAAGGAGCTTGTGAGGGTAAAAGATCTGAGTCTGAAGGACCAGCGGCATTACCGAGAGGTGGTGAGAAGGACGAGGTTGATCTATGACTCACTTCGGGTGCTGGCGACGGCGGAGGAGGAGAGGAGGATGATGCTGACTGATTGGAGGAAGGCCAGAGGGGACCTTAGGGCATCGACTTTGATGAAAACTTGCGGCCTTTGGCTTAACCGCGACAAGAGGATCGTCGGCGCCATCCCTGGGGTTTTTGTTGGGGATGTGTTCTTATACAGGATGGAATTATGTGTTGTTGGCCTTCACGGGCAGACGCAGGCCGGAATTGATTATCTTCCGGCGAGTATGAGCTCCAATGGTGAGCCAATTGCCACCAGTGTCATTGTTTCTGGTGGCTATGAGGATGATATGGATGATGGTGATGTTATCATTTACTCTGGTCATGGAGGACAGGACAAGCATTCTAGGCAGGTGTTTCATCAGAAGTTGGAAGGAGGGAATTTGGCATTGGAGAGGAGTATGCATTATGGGATTGAGGTGAGGGTTATTCGGGGATTGCGGTACGACGGAACTGCCACTGCTGCCAGTAAGGTTTATGTTTATGATGGTTTGTATAGGATTATGGATTGCTGGTTTGATGTTGGGAAGTCTGGTTTCGGTGTTTATAAGTATAAGCTGTTTAGGGTTGATGGGCAGGCTAAGATGGGTAGTGCTGTTCTTAAGGAGGCTTGTATGCTTAGGAAGGATCCATTGTGTTTTAAGCCTGTGTGTTGTTTGTCTCTTGATATTTCACATAGGAGGGAGAATGTTGCGATTCGGCTTTTTAACGACATTGATAAGAGTAATGAACCGCTTTGTTATGAGTATCTTCCGAAGACTAATTTTCCGCCTATGGTGTTTCATCAGACTGGGAACGCTATGGGTTGTGAGTGTGTGGATGGTTGTGTTGAAGGCTGCTTTTGCGCTATGAAAAATGGAGGCGAGTTTCCTTATAATCAGAGTGGGATTTTGTTGAGAGGGAAGCCTATAATATTTGAATGTGGCCCCTTTTGCCGATGTCCTCCGCATTGTCGGAACCGTGTCGCACAGAAGGGGTTGAAAAGTAGGTTGGAAGTGTTTAGGTCTAGGGAAACTGGCTGGGGAGTTAGATCCTTGGACCTTATACAAGCTGGTGCTTTTATATGCGAATATACGGGTGTTATCCTGACCAGGCAGCAAGCACAAATTTTGACCATGAATGGTGATGCATTGATATATCCTAATCGGTTTACTGATAGGTGGGCAGAATGGGGGGATATATCTCTAATAAATTCCAATTATGTTCGCCCATCATTTCCGTCGATACCTCCTTTAGATTTTGCTTTGGATGTGTCAAGATTGAGGAATGTAGCCTGCTACATGAGTCATAGTACATCTCCGAATGTGTTGGTTCAGTTTGTTCTGTATGATCACAATAATTTAATGTTCCCTCACCTTATGCTATTTGCAATGGAGAGCATCCCGCCGATGAGAGAGCTCAGCCTTGATTACGGGGTGACTGATGACTGGACAGGCAAGCTCGCTATATGTAACTGA 2160 0.4852 MESVTSAQNTNQPKETPFPLFPPGIPIPTTTIEKAVTATTTATATNVPTPFLIIPKHEPVEECTTPIPTSNNQDVKPIFPNAPRRETLPAPVTAPATAPPSATSCDPSDNANGLYEEFNRVSQLFRTAFAEQQQHQLRASQQMDSSNDLVLDPNSGAIVPVPPPQEYGGNWNGNDAAGYEGSASSSGGNMTLAKRNRLKELVRVKDLSLKDQRHYREVVRRTRLIYDSLRVLATAEEERRMMLTDWRKARGDLRASTLMKTCGLWLNRDKRIVGAIPGVFVGDVFLYRMELCVVGLHGQTQAGIDYLPASMSSNGEPIATSVIVSGGYEDDMDDGDVIIYSGHGGQDKHSRQVFHQKLEGGNLALERSMHYGIEVRVIRGLRYDGTATAASKVYVYDGLYRIMDCWFDVGKSGFGVYKYKLFRVDGQAKMGSAVLKEACMLRKDPLCFKPVCCLSLDISHRRENVAIRLFNDIDKSNEPLCYEYLPKTNFPPMVFHQTGNAMGCECVDGCVEGCFCAMKNGGEFPYNQSGILLRGKPIIFECGPFCRCPPHCRNRVAQKGLKSRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVILTRQQAQILTMNGDALIYPNRFTDRWAEWGDISLINSNYVRPSFPSIPPLDFALDVSRLRNVACYMSHSTSPNVLVQFVLYDHNNLMFPHLMLFAMESIPPMRELSLDYGVTDDWTGKLAICN* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3308 719 MobiDBLite consensus disorder prediction 1 15 - -
Amo10g3308 719 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 133 719 IPR025794 GO:0016571
Amo10g3308 719 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 55 716 - -
Amo10g3308 719 SMART G9a_1 269 427 IPR003105 -
Amo10g3308 719 MobiDBLite consensus disorder prediction 84 108 - -
Amo10g3308 719 SUPERFAMILY SET domain 448 708 IPR046341 -
Amo10g3308 719 MobiDBLite consensus disorder prediction 1 23 - -
Amo10g3308 719 Pfam SET domain 574 706 IPR001214 GO:0005515
Amo10g3308 719 Pfam Pre-SET motif 458 555 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo10g3308 719 ProSiteProfiles SET domain profile. 563 706 IPR001214 GO:0005515
Amo10g3308 719 SMART set_7 563 712 IPR001214 GO:0005515
Amo10g3308 719 SMART preset_2 455 547 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo10g3308 719 ProSiteProfiles YDG domain profile. 274 423 IPR003105 -
Amo10g3308 719 Gene3D - 271 431 IPR036987 -
Amo10g3308 719 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 55 716 - -
Amo10g3308 719 SUPERFAMILY PUA domain-like 255 435 IPR015947 -
Amo10g3308 719 ProSiteProfiles Pre-SET domain profile. 502 560 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo10g3308 719 Pfam SAD/SRA domain 273 427 IPR003105 -
Amo10g3308 719 Gene3D SET domain 432 719 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3308 Amo-Chr10 98726438 98731257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3308 216 708 Su(var)3-9 homologs AT5G04940 38.200 1.31e-102 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo10g3308 SAD_SRA 6.1e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3308 K11420 - gmx:100804592 960.674