Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3307 ATGAAGCGCGACTACTATGAAATCTCCGACGACGAATGGGACCAACACGAAGAACAGTTCAAGCCCTCACGAATCCTCAAGAGACCCAACTCCACTCCTCCTTCTCCTCCTCCCATCGAGTCCTTCGCTTACAACAACACCAACAACAATTGCCACGACGAGGACGACGATTGCGTTGAAATCACTCGCGCTTCCGCAGCTTTTCCGGATGAATTGGACGATCTGGAGGATGCTGACGTGGATAACAACAATTCCACTGCAGCTGCAGCCCCGAATCGTGGCCGTCGGTTCATCATCGACGATGACGACGAAGATGGCGAGGAAGAGGAAAGTAATCAGAATAGGAATAGGAATGTTGCGGAATTGTATGAAATAGGGTCATCTTCTTCGGAGGAAATTGAGGAAGAAGAGGTTATGGAAGGTGATGTGGTTGGTAGGGCTTTGCACAAGTGCGCAAAGATATCGGCGGAGCTGAAGGGGGAGCTTTTCGGGTCGTCGGTGACTGCATGCGACAGGTATTCTGAAGTGGAGTCTTCTTCAGTGAGGATCGTAACTCAGGACGATGTAGACGTTGCGTGTGGGTATGAGGATGAGGATTCGGATTTTCAACCTCTGCTGAAGCCGTATCAGCTTGTTGGTGTCAACTTCTTGCTTCTACTGTATCGGAAGCGGATTGGAGGAGCCATATTGGCAGATGAAATGGGGCTGGGCAAAACTGTTCAGGCCATTACATATTTAACTTTGTTGAATCACTTGCATAATGATCCTGGTCCACATCTCATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGCCCATCAGTTTCTACTCTTCAATACCATGGGGCTGGACGAACAGCATATTGCAAGGAGTTGAACTCCCTCTCGAAGGCAGGGTTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTCCACAGCAGAAAGATGATCGTAAAATATTGAAGCGCTGGAGGTGGAGCTGCGTGCTGATGGATGAAGCTCATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATTTGATGGCTGTTGCACGGAATGCAAACCAACGATTGATGTTGACTGGGACACCACTTCAGAACGATTTACATGAGTTATGGTCGTTGTTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGGTGTTGACTTAAAAAAGCTGCTCAATCCAGACAATAGAGATTTAATCGGTCGTATGAAGTCTATATTGGGGCCATTTATTTTGCGGCGTTTGAAATCTGATGTAATGCAGCAGCTTGTTCCTAAAATACAGAAGGTTGAATATGTTGTAATGGAAAAGCAACAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTGTCTCACAAGCTCGGATAGCCAAGTGCTCTGAGCTTAACACCAAATCTGTTCTTGAAGCTCTTCCACGCCGACAAATAAATAACTACTTTGTTCAGTTCAGAAAGATTGCTAACCATCCCTTGCTGATACGGAGAATCTATAATGATGACGATGTCATTCGCTTTGCTAGGAAGTTGCATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTAGACAGAGTTATAGAGGAACTTAAAAGTTACAACGACTTCTCTATTCACCGGCTTTTACTTCACTATGGTGTCAATGATAGAAAAGGGATACTTTCCGAAAACCATGTTATGCTTTCTGCAAAATGTGGGGCCTTGGCAGAGCTTCTTCCTTCACTAAAGAAGGAGGGTCATCGTGTCTTGATCTTTAGTCAATGGACGTCAATGCTTGACATATTGGAGTGGACCTTAGATGTCATTGGGTTGACCTACAAACGACTTGATGGAAGTACACAGGTGGCTGAAAGGCAAACGATAGTTGATACATTCAACAACAATACTTCCATTTTTGCATGCTTGCTATCGACAAGAGCCGGAGGACAAGGTTTGAACTTAACGGGAGCTGACACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGACAAGCAGAAGATCGTTGTCATAGAATTGGTCAAACGAAGCCTGTAACCATATACCGGTTGGTAACTAGGGGAACAGTTGATGAAAATGTATATGAGATCGCGAAGAGAAAGTTGGTACTCGATGCTGCTGTCCTCGAGTCCATGGAGGAGGTTAGTGAAGGCAACATGCCTGAGAAAACCATGGGAGAGATATTATCTGCAATTTTGTTGAGTTAA 2268 0.4431 MKRDYYEISDDEWDQHEEQFKPSRILKRPNSTPPSPPPIESFAYNNTNNNCHDEDDDCVEITRASAAFPDELDDLEDADVDNNNSTAAAAPNRGRRFIIDDDDEDGEEEESNQNRNRNVAELYEIGSSSSEEIEEEEVMEGDVVGRALHKCAKISAELKGELFGSSVTACDRYSEVESSSVRIVTQDDVDVACGYEDEDSDFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDPGPHLIVCPASVLENWERELKKWCPSVSTLQYHGAGRTAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSPQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMAVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEGVDLKKLLNPDNRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQKVEYVVMEKQQENAYKEAIEEYRAVSQARIAKCSELNTKSVLEALPRRQINNYFVQFRKIANHPLLIRRIYNDDDVIRFARKLHPIGAFGFECTLDRVIEELKSYNDFSIHRLLLHYGVNDRKGILSENHVMLSAKCGALAELLPSLKKEGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNNTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTRGTVDENVYEIAKRKLVLDAAVLESMEEVSEGNMPEKTMGEILSAILLS* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3307 755 Gene3D - 176 415 IPR038718 -
Amo10g3307 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 397 IPR014001 -
Amo10g3307 755 Pfam Helicase conserved C-terminal domain 584 694 IPR001650 -
Amo10g3307 755 Pfam SNF2-related domain 224 512 IPR000330 GO:0005524|GO:0140658
Amo10g3307 755 PANTHER SNF2/RAD54 HELICASE FAMILY 63 753 - -
Amo10g3307 755 CDD SF2_C_SNF 579 705 - -
Amo10g3307 755 MobiDBLite consensus disorder prediction 1 55 - -
Amo10g3307 755 MobiDBLite consensus disorder prediction 1 24 - -
Amo10g3307 755 MobiDBLite consensus disorder prediction 75 99 - -
Amo10g3307 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 736 IPR027417 -
Amo10g3307 755 SMART ultradead3 202 407 IPR014001 -
Amo10g3307 755 SMART helicmild6 611 694 IPR001650 -
Amo10g3307 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 585 752 IPR001650 -
Amo10g3307 755 CDD DEXHc_Snf 206 399 - -
Amo10g3307 755 Gene3D - 443 753 IPR027417 -
Amo10g3307 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 432 IPR027417 -
Amo10g3307 755 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 63 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3307 Amo-Chr10 98706267 98713196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3307 227 733 RAD5 or RAD16-like Gene Family AT5G22750 27.113 1.59e-46 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo10g3307 SNF2_N 4.3e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3307 K14439 - gmx:100806323 1236.09