Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3306 ATGGCTGCTACTTCTTCATCATCAACACCGTTCTTCCAAATCAGACAAGAGAATCATCATGAGAATCTGATTTCACAGCAGCAGCAGCAGCTTCTTCAATCGTCATCCACTACAACTTCTGCACCACCACCACCACCACCACCACCACTCCCTCAAAAGAAAAGAAGAAACCACGCTGCAGGAACACCATATCCAGATGCAGAGGTGATAGCACTGTCGCCGAAGACGTTAATGGCGACAAACAGGTTCGTATGTGAAGTTTGCAACAAAGGATTCCAAAGAGAACAGAACTTACAGCTTCACAGAAGAGGACACAACCTTCCATGGAAGCTCAAGCAGAAGAACCCTAACAAAGAGCCTAAAAGGAAGGTCTATCTCTGCCCTGAACCCACATGCGTCCACCACCACCCTTCTCGGGCTCTCGGCGACCTCACCGGCATCAAGAAACACTTCTCTCGCAAACACGGCGAGAAGAAGTGGAAGTGTCACAAGTGTTCCAAGAAGTACGCCGTCCAGTCCGACTGGAAGGCGCACTCCAAAACCTGCGGTACCAAAGAGTATAGGTGCGACTGCGGCACCCTCTTCTCCAGGCGTGACAGTTTCATCACTCACAGAGCCTTTTGTGATGCATTAGCACATGAAAATGCATCAAGACACCCTCCTCTAAACCCTTTTGGAAATCTCTATCCCACAAACAACAACAACAACAACAACATCTTGAGCCTTGGAAATAGTACTACCACTTTCATTGCACCAAAATTTGAGCATTTAATATCACCACCGCCACCACCACCACCACCATTCAATAACAACAACCACCACCACCACCACCAATCTGCATTATTATTTTCACATCACTCGTCATCATCACCATCACCATTCTTCATGGAAGGATTTCAAGAACTCCAGCCTCATCATCAACACCAACACCAACAAGAACCCTTATTATTCTCATCTAATAATAACAACATGAACATGTTCAACCTCAGTTTCTTCCCAAGAAGCAATAATAGCAGTGGCGGTGGAAGTAGCATTATCACCGATCATCATCATCAAATTGGATCAGCTTTTTCTTCTTCTTCATCTTCAATCTTCGGCAACAATAATTCATCACTGCAACAACAACAACAACAACAACAACAAGAGAACAACAACAGCGACAACAACATGTGTTCTCCACACATGTCTGCAACTGCATTGCTCCAGAAAGCTGCACAAATGGGTTCAACAACTTCAACCACCAATAACAGTAACCACAGTGCTTCTTCTCTACTAAGAGCAATGGCCAATAATAATAACAACCACCACCACCACCTCAATGCTGACGTGGACAATGATGAACACAACGACAATCTTCGCGGATTGATGAACTCTTTGGCAAATGAAAACATATCTTCTTCCATATTCGGCAACGTGAAAGAGAATGGAAACAACCACAATAACAACAATCTTGCTGGTGTGTGCTTTGGAGGATCTGATGATAAGTTGACGTTAGATTTTCTTGGTGTTGGAGGAGTTATCAGAAACATCACTGGGATCAGTACTACTTCTTTCGACCCAACAATGCAATGA 1572 0.4434 MAATSSSSTPFFQIRQENHHENLISQQQQQLLQSSSTTTSAPPPPPPPPLPQKKRRNHAAGTPYPDAEVIALSPKTLMATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPNKEPKRKVYLCPEPTCVHHHPSRALGDLTGIKKHFSRKHGEKKWKCHKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAHENASRHPPLNPFGNLYPTNNNNNNNILSLGNSTTTFIAPKFEHLISPPPPPPPPFNNNNHHHHHQSALLFSHHSSSSPSPFFMEGFQELQPHHQHQHQQEPLLFSSNNNNMNMFNLSFFPRSNNSSGGGSSIITDHHHQIGSAFSSSSSSIFGNNNSSLQQQQQQQQQENNNSDNNMCSPHMSATALLQKAAQMGSTTSTTNNSNHSASSLLRAMANNNNNHHHHLNADVDNDEHNDNLRGLMNSLANENISSSIFGNVKENGNNHNNNNLAGVCFGGSDDKLTLDFLGVGGVIRNITGISTTSFDPTMQ* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3306 523 MobiDBLite consensus disorder prediction 261 289 - -
Amo10g3306 523 Gene3D Classic Zinc Finger 125 208 - -
Amo10g3306 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 512 - -
Amo10g3306 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Amo10g3306 523 MobiDBLite consensus disorder prediction 1 38 - -
Amo10g3306 523 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 3 512 - -
Amo10g3306 523 MobiDBLite consensus disorder prediction 356 393 - -
Amo10g3306 523 Gene3D Classic Zinc Finger 66 124 - -
Amo10g3306 523 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Amo10g3306 523 SUPERFAMILY beta-beta-alpha zinc fingers 82 180 IPR036236 -
Amo10g3306 523 MobiDBLite consensus disorder prediction 39 53 - -
Amo10g3306 523 Coils Coil 369 389 - -
Amo10g3306 523 SMART c2h2final6 160 180 IPR013087 -
Amo10g3306 523 SMART c2h2final6 83 105 IPR013087 -
Amo10g3306 523 SMART c2h2final6 125 155 IPR013087 -
Amo10g3306 523 Pfam Zinc-finger double-stranded RNA-binding 83 105 IPR022755 -
Amo10g3306 523 MobiDBLite consensus disorder prediction 271 289 - -
Amo10g3306 523 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3306 Amo-Chr10 98690713 98695070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3306 52 220 IDZ Gene Family AT2G02070 87.574 1.67e-103 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo10g3306 zf-C2H2_jaz 6.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3306 K25870 - gmx:102663407 446.047