Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3302 ATGGAGAAGGTGGCTCCTCCGATCTTTATGCACCAAGCACTTCAAAGTCGGTTCTGTGATGTACCGATGACTACTACCGCCACCACGAAGAAGCGCGATCTGTCGTACGACGTCGATAAGAGCAGCTCCAACGGTAATTGGAATCCAAACGCGTGGAGCTGGGACAGTGTCAGGTTTATCGGGAAGCCAGTACCGCAGCAAAACGGTGTCGTTTCAGTTGAGGAAGAAACGCTGCGTTTAAATCTCGGTAGCAGTGGTGTTAGTGGCAGCGGCGGAAGCGTTGACCCGAGCGTGTCGCGGCCGAGTAAGAGAGTGCGTTCTGGTTCACCCACCGGAACGGCGTCGTATCCGATGTGCCAGGTGGATAACTGCAAGGAAGATCTGTCAAGTGCAAAAGACTATCATAGAAGGCACAAAGTGTGTGAGCTTCATAGCAAAGCCTCGAAGGCCCCCCTTGGGAACCAAATGCAAAGGTTCTGCCAGCAGTGTAGCAGGTTTCACCCCTTGACGGAGTTTGATGAAGGGAAGCGAAGCTGTAGACGTAGACTGGCTGGGCACAACCGCCGGAGAAGAAAGACCCAACCGGAAGATGTCACGTCGCAGCCTGAGAGTGTGGCTACTGGAAATGCAGAAATCTTCAATTTATTGAGTGCCATAGCAAGTTCACAAGGTCAGAAGCCAAATGGTAAGTTTGAGGACAGAAGCAAGATTGCGTCACAAGTTCCGGATAAAGACCAGCTTGTTCAGATTCTTAATCGGATACCGTTGCCAGCTGATCTTGCAGCAAAGTTGCTCAATGTTGGCGGTAAAGGTCAAATACAAACTTCATCTTATCATCATGACAAAGTGAACCAGAGCAATTCTGGTCCATTAACGAAGGACTTACTTGCTGTTCTTTCAACCACTTTATCAGCATCTACTCCCAACTCTCAAAAGAGTAGCCAGAGTAGTGACAGTGAGAAGTCTAGGGCTAGTGCTGACCAAGTTGGTGAAAGTTTACAAATGAGACAACATCCACAAGAATTTGCTTCTGTTGGAGACGAAAGAAGTAGTGGCAGTTCGCAATCTCCAGTTGAAGATTCAGACTTCCCAGAAGTTCGAGTTAATTTGCCACTGCAACTCTTTAGTTCTTCTCCTGAAGTTGGCAACCCGCCAAAATTGACACCTTCGCAAAAGTATTTCTCTTCTGACAGCAGTAATCCTGTGGAAGAGAGGTCACCATCATCTTCCCCTGCTGTGGACAATCAATTCGATTTGCAAGGCGTGGCTAGAGGTTTCAAGGCTGACGGCGTTCCAAGCAGAAGAGAAGTAAATGCAAATAAAGAAGCTAGCCAAAGTCAAAGTTATAATATATCTCTTAATCTCTTTAATGCGCCAAATAGCAGAGTCCAGCCTAGCTCACTTCAAAGTGTTCCATTTCAAGCTGGATATGCATCTTCTGGTTCTGATCATTCACCTCCAAGTTTGAATTCAGATGCTCAGGATCGCACTGGGAGAATAATGTTCAAACTATTTGACAAAGATCCTAGTCATTTCCCTGGAACACTGCGAACACAGATTTACAATTGGCTTTCTAATAGTCCATCAGATATGGAGAGCTACATTAGGCCGGGCTGCGTGGTACTGTCGCTTTATGCTTCAATGTCCTCTGCTGCCTGGGAGCAACTAGAAGAAAACTTCCTGCAACATGTCCATTCTTTAATTCAAAGCAATTCCGACTTTTGGAGAATTGGAAGGTTTCTGGTTCATTCTGGCAATCAGTTAGCATTACACAAAGATGGAAAAATTCACTTATGCAAGCCATGGAGAACTTGGAGGTCTCCTGAATTGATATCAGTGTCCCCTTTGGCAATTGTTAGTGGACAAGAAACCTCTTTTTCATTGAAGGGTAGAAACCTGTCAAATCCTGGCACCAAGATTCATTGCACAGGTACTGGCGGTTACACGCCCATAAAAGTTGTTGAATCTGCATGTTATGGTATGACCTATGACAAGATAAAATTGAGTGGTATTAAAGTTCAGGATGCTTCTCCTGGTCTTTTGGGTCGCTGTTTTATCGAGGTAGAAAATGGTTTCAAGGGTAGCAGTTTTCCAGTGATAATAGCTGATGCAACCATTTGTAAGGAATTGAGACCACTTGAATCTGAATTCGACAAGGAAGAAAATGCAAGTGATGCCATTTCAGATGAGCATGGATATGATCTTGGAAGACCAAGGTCAAGGGAGGAGACTCTACACTTCCTGAATGAGCTTGGGTGGTTATTCCAAAGAAAAAGGTTCTCATATACGGATTTGGTTCCAGATTATTCACTTGACAGATTCAGATTCATACTTACATTTTCTGTGGAAAGAAATTGCTGTATGCTAGTTAAAACACTCTTGGATATGTTGGTTCAAAAATACTTGGAAGGCCAATGGTCGTCAACGGCATCATTGGAGATGCTCAACGCAATCCAACTCCTGAATAGAGCGGTTAAAAGAAAGTATGTTAACATGGTTGATTTGCTCATTCAGTATGCTGTGCCTAGCAAAAATGATGCATCCCGGAAGTACGTATTTCCGCCAAATGTTGCTGGCCCTGATGGTATTACGCCATTGCACTTGGCAGCATGCACATCGTCATCTGAGGGTGTAATTGACTCTCTGACAAATGATCCGCAGGAGATTGGGTTGAACAGCTGGGATTCTCTTCTAGATGCAAATGGGCAGACTCCGCATGCTTATGCCATGATGAGGAATAATCATTCTTATAATGTGCTGGTTGCTCGAAAACTCTCCGATAGAAGAAGAGGCCATGTTTCAGTAACAATTAATAGTGAGATAGAGCATTCATCAATGGACATCGAGCTTAAGCAAAGGCAAAGTGACCAAACCAAAAGAGGTCAGAATTCCTGCACTAAGTGTAGTGCAATGGCGGATGTTCGCTACAGCAGCAGAATTCCTGGTTCACGGAGCTTTGGTCACCACCGACCCTTTATTCATTCGATTCTAGCTATTGCTGCCGTATGTGTCTGTGTCTGTCTGTTCTTGCGAGGACACCCTTGGGTTGGCTCGGTTACACCCTTCAATTGGGAGAAGTTGGATTATGGCACCATATAA 3099 0.4485 MEKVAPPIFMHQALQSRFCDVPMTTTATTKKRDLSYDVDKSSSNGNWNPNAWSWDSVRFIGKPVPQQNGVVSVEEETLRLNLGSSGVSGSGGSVDPSVSRPSKRVRSGSPTGTASYPMCQVDNCKEDLSSAKDYHRRHKVCELHSKASKAPLGNQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSQPESVATGNAEIFNLLSAIASSQGQKPNGKFEDRSKIASQVPDKDQLVQILNRIPLPADLAAKLLNVGGKGQIQTSSYHHDKVNQSNSGPLTKDLLAVLSTTLSASTPNSQKSSQSSDSEKSRASADQVGESLQMRQHPQEFASVGDERSSGSSQSPVEDSDFPEVRVNLPLQLFSSSPEVGNPPKLTPSQKYFSSDSSNPVEERSPSSSPAVDNQFDLQGVARGFKADGVPSRREVNANKEASQSQSYNISLNLFNAPNSRVQPSSLQSVPFQAGYASSGSDHSPPSLNSDAQDRTGRIMFKLFDKDPSHFPGTLRTQIYNWLSNSPSDMESYIRPGCVVLSLYASMSSAAWEQLEENFLQHVHSLIQSNSDFWRIGRFLVHSGNQLALHKDGKIHLCKPWRTWRSPELISVSPLAIVSGQETSFSLKGRNLSNPGTKIHCTGTGGYTPIKVVESACYGMTYDKIKLSGIKVQDASPGLLGRCFIEVENGFKGSSFPVIIADATICKELRPLESEFDKEENASDAISDEHGYDLGRPRSREETLHFLNELGWLFQRKRFSYTDLVPDYSLDRFRFILTFSVERNCCMLVKTLLDMLVQKYLEGQWSSTASLEMLNAIQLLNRAVKRKYVNMVDLLIQYAVPSKNDASRKYVFPPNVAGPDGITPLHLAACTSSSEGVIDSLTNDPQEIGLNSWDSLLDANGQTPHAYAMMRNNHSYNVLVARKLSDRRRGHVSVTINSEIEHSSMDIELKQRQSDQTKRGQNSCTKCSAMADVRYSSRIPGSRSFGHHRPFIHSILAIAAVCVCVCLFLRGHPWVGSVTPFNWEKLDYGTI* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3302 1032 ProSiteProfiles Zinc finger SBP-type profile. 116 193 IPR004333 GO:0003677
Amo10g3302 1032 SUPERFAMILY SBT domain 117 197 IPR036893 GO:0003677|GO:0005634
Amo10g3302 1032 Gene3D - 772 957 IPR036770 -
Amo10g3302 1032 MobiDBLite consensus disorder prediction 183 205 - -
Amo10g3302 1032 SUPERFAMILY Ankyrin repeat 820 916 IPR036770 -
Amo10g3302 1032 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 37 1032 - -
Amo10g3302 1032 Gene3D - 110 180 IPR036893 GO:0003677|GO:0005634
Amo10g3302 1032 MobiDBLite consensus disorder prediction 466 493 - -
Amo10g3302 1032 Pfam SBP domain 119 192 IPR004333 GO:0003677
Amo10g3302 1032 MobiDBLite consensus disorder prediction 303 363 - -
Amo10g3302 1032 MobiDBLite consensus disorder prediction 375 415 - -
Amo10g3302 1032 MobiDBLite consensus disorder prediction 82 115 - -
Amo10g3302 1032 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 1032 IPR044817 GO:0003677
Amo10g3302 1032 MobiDBLite consensus disorder prediction 303 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3302 Amo-Chr10 98646857 98652718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3302 3 1032 SBP-box Gene Family AT1G20980 50.512 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo10g3302 SBP 7.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3302 - - lang:109360589 1415.21