Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3290 TCTATCCATCATTCGTTTGCTATGGCTTCCTCTAGCCGTCAACAAAACAAGCATTCTCCTTCTACTTCTACTGAGACCAGTTTCTTTAAGATTATTCTCAGAAAAGCTCTTCAAGATGGAAACTTTAAGTTGACAAAAAAGTTCACTAGACAATATGGTTCTGTCTTATCAAACCCATTGTATCTTAAGCCTCCAGATGGTACTGAATGGAAAGTCTATTGGACTAATCATGATGGTGTAATTTTGTTTAAAAAGGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATTTATTATACTTTGAGTATAATATTGGAACTTCTCACATTGAAGTACGCATACATGACATGAGTTGCCACCAAATAGAGTATCCTGCCAATGATCATATCAAAGAGCAGTTGCCACGCAGGGACCAGCAGCCGGTGAAAAGGCCAAAAGAATCAAAAACTAGAGATGTGGATAGCAGTCCCAACACCCAAAACATGAGACTTAATGAGGAACAGCAGAAGAAAAGATTGAATGAACCACTGCCAGGAGGAGTCCGGGGCCAACCGGAGAAAAAAATGAGAGCACTAGTGTCTTCTGCTTCTAAAAGTAGACAGTTGGAAAATGACACACAAATTAGGGATGGTGAAAGAAGCCTCAGTTCACACGGTATTAAATCCAAAGAGAAAAACCATGAGGTGCCAGTGTCTGTCAATCAAGATTCTAATGGCAAAAGGAATAGAAGAAGAAAAGATTCTGAATCTTCTGTTAGGCTCTGTCCTGCAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTTAAGCGGGAAAAGCCCTCTTTCATCATCAAGATAACGCAACGGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAATTCTTCAGAAAGTATTTTGAAAATAATCCACAAAATGCAAATATAAGGTTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTATAGGCCATCATCATGTGTTGCCTTTATCTCTGCTGGTTGGAACCTTTTTGCTCGAGCTAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCATCAATAGAAAGGATCCGGTGTTTGATGTTCACATTTGTCGTCGACAACGCCGCGAATCACTTTCCAAACCAGTGACTCGTGTGATTCAGCTCCCGAAAGAAGCTAAGGAGCTCAACTCACAAAATCCCTCTTTCATGGTCAAGATAAAAGACAGTGATCCAAGGAGATCAAGGCCTAACTTATCAGCTATCTTTTACAGAAAGTATTTTAAAAAGAATCAACAGGATGTAAAATTACAGTTCGAAAAGGAGTTGTGGCCTGCTACGATTATCTACAATCCGTCATCGAAAAACAGCTTTATTTCGGCTGGTTGGAGCTCTTTTGCCAGAGCAAGTAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAGCTCATCAATAAAAAAGATCTGTTTGATGTTCATATCTGTAGAGCCCAGTGCTAG 1494 0.3942 SIHHSFAMASSSRQQNKHSPSTSTETSFFKIILRKALQDGNFKLTKKFTRQYGSVLSNPLYLKPPDGTEWKVYWTNHDGVILFKKGWKEFVAYYSLDHGHLLYFEYNIGTSHIEVRIHDMSCHQIEYPANDHIKEQLPRRDQQPVKRPKESKTRDVDSSPNTQNMRLNEEQQKKRLNEPLPGGVRGQPEKKMRALVSSASKSRQLENDTQIRDGERSLSSHGIKSKEKNHEVPVSVNQDSNGKRNRRRKDSESSVRLCPARPESLKEAKKFKREKPSFIIKITQRSQTRAPCYFSTKFFRKYFENNPQNANIRFGKKLFPVKLIYRPSSCVAFISAGWNLFARASKLQAGDVCLFKLINRKDPVFDVHICRRQRRESLSKPVTRVIQLPKEAKELNSQNPSFMVKIKDSDPRRSRPNLSAIFYRKYFKKNQQDVKLQFEKELWPATIIYNPSSKNSFISAGWSSFARASKLEAGDVCVFELINKKDLFDVHICRAQC* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3290 497 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 382 495 - -
Amo10g3290 497 CDD B3_DNA 276 371 IPR003340 GO:0003677
Amo10g3290 497 ProSiteProfiles B3 DNA-binding domain profile. 443 496 IPR003340 GO:0003677
Amo10g3290 497 MobiDBLite consensus disorder prediction 129 259 - -
Amo10g3290 497 Pfam B3 DNA binding domain 289 373 IPR003340 GO:0003677
Amo10g3290 497 Pfam B3 DNA binding domain 35 117 IPR003340 GO:0003677
Amo10g3290 497 Pfam B3 DNA binding domain 415 495 IPR003340 GO:0003677
Amo10g3290 497 PANTHER B3 DOMAIN-CONTAINING 382 495 - -
Amo10g3290 497 Gene3D - 260 374 IPR015300 -
Amo10g3290 497 Gene3D - 387 496 IPR015300 -
Amo10g3290 497 ProSiteProfiles B3 DNA-binding domain profile. 27 121 IPR003340 GO:0003677
Amo10g3290 497 MobiDBLite consensus disorder prediction 129 156 - -
Amo10g3290 497 SUPERFAMILY DNA-binding pseudobarrel domain 26 128 IPR015300 -
Amo10g3290 497 MobiDBLite consensus disorder prediction 241 259 - -
Amo10g3290 497 CDD B3_DNA 400 494 IPR003340 GO:0003677
Amo10g3290 497 MobiDBLite consensus disorder prediction 1 23 - -
Amo10g3290 497 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 21 371 - -
Amo10g3290 497 SUPERFAMILY DNA-binding pseudobarrel domain 272 372 IPR015300 -
Amo10g3290 497 Gene3D - 20 122 IPR015300 -
Amo10g3290 497 PANTHER B3 DOMAIN-CONTAINING 21 371 - -
Amo10g3290 497 CDD B3_DNA 27 119 IPR003340 GO:0003677
Amo10g3290 497 SMART B3_2 28 121 IPR003340 GO:0003677
Amo10g3290 497 SMART B3_2 402 496 IPR003340 GO:0003677
Amo10g3290 497 SMART B3_2 278 373 IPR003340 GO:0003677
Amo10g3290 497 ProSiteProfiles B3 DNA-binding domain profile. 319 373 IPR003340 GO:0003677
Amo10g3290 497 MobiDBLite consensus disorder prediction 206 233 - -
Amo10g3290 497 SUPERFAMILY DNA-binding pseudobarrel domain 395 495 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3290 Amo-Chr10 98543626 98546972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3290 392 487 B3 DNA Binding Superfamily AT3G18990 31.959 9.17e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3290 B3 2.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3290 - - adu:107471893 887.871