Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3288 ATGGTTGCTAACGCCAGATTCATAACACTGCAGAAGTTACCAATAAAGTTCACTGAAAAACATGGTTCTGGCCTATCAAATCCATTGTATCTTAAGCCTCCGGATGGTACTGAATGGAGAGTAGATTGGACTAATCAGGATGGTGAAATTTTGTTTAAAAAGGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATTTGTTATGGTTTGATTATAATATTGGAACTTCTCACATGGAAGTACACATATTTGACATGGGTTGCCTCCAAATAGAGTATCCTGACAATGATCAGATCAAAGAGCAGCTGCCACGCAGAGATCAGCAGTCAGTGAAAAGGCCAGAAGAACAAAAAACTAGACATGTGGATAGCAGCAAACGGAATAGAAGAAGAAAAGATTCTGAATCTTCTATTAGGCCCTGTCCTGCAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTTAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAACGCAACGGTCTCAAACGAGAGCACCATGTTCACTTTCCAAACCAGTGACTCATGTGATTCAGCTCCCAAAAGAAGTTAAGGAGCTCAACTCACAGAATCCCTCTTTCATGGTCAAGATAAGAGACAGTGATCCAAGGAGATCAAGGCCTAACTTATCAGCTATCTTCTACAGAAAGTATTTTAAAAAGAATCAGCAGGATGTAAAATTACAGTTCGGAAAGGAGTCGTGGCCTGCTACGATAATCTACAATCCGACATCGAAAAACAGCTTTATTTCGGCTGGTTGGAGCTCTTTTGCTAGAGCAAGTAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAGTTCATCAATGAAAAAGATCTGTTTGATGTTCATATTTGTAGAGCCCAATGCTAG 900 0.3978 MVANARFITLQKLPIKFTEKHGSGLSNPLYLKPPDGTEWRVDWTNQDGEILFKKGWKEFVAYYSLDHGHLLWFDYNIGTSHMEVHIFDMGCLQIEYPDNDQIKEQLPRRDQQSVKRPEEQKTRHVDSSKRNRRRKDSESSIRPCPARPESLKEAKKFKWEKPSFIIKITQRSQTRAPCSLSKPVTHVIQLPKEVKELNSQNPSFMVKIRDSDPRRSRPNLSAIFYRKYFKKNQQDVKLQFGKESWPATIIYNPTSKNSFISAGWSSFARASKLEAGDVCVFEFINEKDLFDVHICRAQC* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3288 299 CDD B3_DNA 202 296 IPR003340 GO:0003677
Amo10g3288 299 MobiDBLite consensus disorder prediction 106 153 - -
Amo10g3288 299 SMART B3_2 204 298 IPR003340 GO:0003677
Amo10g3288 299 SMART B3_2 7 90 IPR003340 GO:0003677
Amo10g3288 299 SUPERFAMILY DNA-binding pseudobarrel domain 197 297 IPR015300 -
Amo10g3288 299 SUPERFAMILY DNA-binding pseudobarrel domain 12 97 IPR015300 -
Amo10g3288 299 ProSiteProfiles B3 DNA-binding domain profile. 203 298 IPR003340 GO:0003677
Amo10g3288 299 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 297 - -
Amo10g3288 299 Pfam B3 DNA binding domain 12 88 IPR003340 GO:0003677
Amo10g3288 299 Pfam B3 DNA binding domain 218 297 IPR003340 GO:0003677
Amo10g3288 299 CDD B3_DNA 13 88 IPR003340 GO:0003677
Amo10g3288 299 Gene3D - 4 91 IPR015300 -
Amo10g3288 299 Gene3D - 187 298 IPR015300 -
Amo10g3288 299 ProSiteProfiles B3 DNA-binding domain profile. 1 90 IPR003340 GO:0003677
Amo10g3288 299 PANTHER B3 DOMAIN-CONTAINING 12 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3288 Amo-Chr10 98518077 98520297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3288 12 289 B3 DNA Binding Superfamily AT3G18990 26.045 8.23e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3288 B3 9.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3288 - - ahf:112717085 256.914