Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3287 ATGGCTTCCTCTAGTTTCCAAAGAAACAAGCATTCTCCTTCCTCTGCCGGTTTCTTCAAGATTGTTCTCAGACAAAACCTTGAAGATGGAAACATTACTAGTTTCATACTTTCATTTGAATTGCAGGAGGTACCAAAAACGTTCAGTATGAAATATGGTGACAGTGTTCCAAATCCAGTGTATCTGAAGCCTCGAGATGGCACTGCATGGAAGATAGATTGGTCTGAGTATGATGGTGCGATTCTATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATCATGGCCATTTGCTGTGGTTTGAGTACAATCAAACTTCTAACATTGAAGTACACATTTTTGACAAGACTTGCCTTGAAATAGACTATCCTTCCATGGATCACATCAGCGATGATGATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTCCTTCAAAAAAAGCAGCACCAAACACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCATGACTAGAGTAGTGAAATGGTGCCCTGAAATAGACTATCCTTCACGAAGAGGCCGAGGCCGACCGAGAAAAACAGAGAAAGCAGCACCAAAGACACATCTTCTTGTACAAACTATCCTTGCAAGGACCACATTAATGATGAACCCGCCACGAAGAGGCCGAGGCCGGCCGAGAAAAACAGGGAAAGCAGCACTAAAGACACCATCTGCTTGTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGACCACATTGATGATCACAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAAAATTGAAAGCAGCAGCAGAAGTATCATCTCCTTCTACAAGTAAAATATTGATGAGTTCTGTCAAAACTGGAGATGTAGAGAAGGCCCCTGATAAACAAAACTGGATGCAGTGTTGCAAGAATGAAGCTAGTCAATCTGAATGA 1047 0.4298 MASSSFQRNKHSPSSAGFFKIVLRQNLEDGNITSFILSFELQEVPKTFSMKYGDSVPNPVYLKPRDGTAWKIDWSEYDGAILFENGWKEFASYYSLDHGHLLWFEYNQTSNIEVHIFDKTCLEIDYPSMDHISDDDSIEILNELPPRGWPRKTEKAAPKTPSPSKKAAPNTPSPCTSKMFTSSAMTRVVKWCPEIDYPSRRGRGRPRKTEKAAPKTHLLVQTILARTTLMMNPPRRGRGRPRKTGKAALKTPSACTSKMFTSSAKTRCPEIDYPSKDHIDDHNMVKVENEPPRRGRGRPRKKLKAAAEVSSPSTSKILMSSVKTGDVEKAPDKQNWMQCCKNEASQSE* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3287 348 MobiDBLite consensus disorder prediction 143 178 - -
Amo10g3287 348 CDD B3_DNA 18 118 IPR003340 GO:0003677
Amo10g3287 348 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 179 - -
Amo10g3287 348 SUPERFAMILY DNA-binding pseudobarrel domain 38 120 IPR015300 -
Amo10g3287 348 PRINTS High mobility group protein (HMGY) signature 233 245 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Amo10g3287 348 PRINTS High mobility group protein (HMGY) signature 282 301 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Amo10g3287 348 MobiDBLite consensus disorder prediction 164 178 - -
Amo10g3287 348 PANTHER B3 DOMAIN-CONTAINING 9 179 - -
Amo10g3287 348 SMART AT_hook_2 293 305 IPR017956 GO:0003677
Amo10g3287 348 SMART AT_hook_2 200 212 IPR017956 GO:0003677
Amo10g3287 348 SMART AT_hook_2 235 247 IPR017956 GO:0003677
Amo10g3287 348 SMART B3_2 31 120 IPR003340 GO:0003677
Amo10g3287 348 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
Amo10g3287 348 MobiDBLite consensus disorder prediction 284 348 - -
Amo10g3287 348 PRINTS AT-hook-like domain signature 200 210 IPR017956 GO:0003677
Amo10g3287 348 PRINTS AT-hook-like domain signature 291 301 IPR017956 GO:0003677
Amo10g3287 348 PRINTS AT-hook-like domain signature 233 244 IPR017956 GO:0003677
Amo10g3287 348 Gene3D - 10 121 IPR015300 -
Amo10g3287 348 Pfam B3 DNA binding domain 44 119 IPR003340 GO:0003677
Amo10g3287 348 MobiDBLite consensus disorder prediction 231 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3287 Amo-Chr10 98514972 98517321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3287 3 140 B3 DNA Binding Superfamily AT4G01580 33.333 3.98e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3287 B3 9.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3287 - - ahf:112783425 457.988