Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3286 ATGCCAAATCCAGTGCAACTCCAGCCTCCAGATGGCACTGAATGGAGAATAGATTGGACTAATCATGATGGTGAGATTCTGTTTGAAAATGGTTGGAAAGAGTTTGCTACATTTTACACTTTGGAGAATGGTCATGTGTTGTGGTTTGAGTACAATGGAACTTCTAACATCAAAGTAAACATATTCGACATGAGTGCCCTCGAAATTGATTATCCTTCCAATGGCCGAATCGGTGATGACAACTCGGTTGAGATTTTGGATGAACCGCCGGCACGAAGGGGCCGAGGCCGGCCGAAGAAAAATGTGATAGCAGAACCAAAGCAATCACGTGCTTCTACTTCTACAAGCAAAATAATGAAAAGTGCCATCAAAACTAAAGATATAGATAAAAATCCCAATACAAAAAAATTGAAGCAGCATGTCGAGAATGAAAAAGATGGTCAATCTGAAGAGTCAGCAGATCTTAAGCTTCCAATAATTCAACGTGCCAGACCAGATATGGATGTTATTAGAGAAGCAAAGAAGTTCAAGTCGAAAAATCCTTCTTTTGTCATAAAGATTAAGCAAATGCACCAAACAGGATCACCAGCAAATCTTCCAGTTTGTTTCTTCAGGATGTACTTCGAGAACAGGAAGCAGTGGCATGCAACATTGATCTATTATCCAAATAGGAAGAATGCCCTGATCTCTAATTGGCGCTTGTTCCTTGAAGAAAATAACTTAAAAGCCGGAGATGTTTGTATCTTTGAGCTCATTAACAGACAAGGTCCAGATCTTAAGATCAATGGAGTATGTTCAGGGATCAAGAGTTGTAACAGAGTCATAGTTTTCATCATACTAAATGGTTGCATTGCAGTGTTATCTCCTTACTACCATAACTAG 882 0.3946 MPNPVQLQPPDGTEWRIDWTNHDGEILFENGWKEFATFYTLENGHVLWFEYNGTSNIKVNIFDMSALEIDYPSNGRIGDDNSVEILDEPPARRGRGRPKKNVIAEPKQSRASTSTSKIMKSAIKTKDIDKNPNTKKLKQHVENEKDGQSEESADLKLPIIQRARPDMDVIREAKKFKSKNPSFVIKIKQMHQTGSPANLPVCFFRMYFENRKQWHATLIYYPNRKNALISNWRLFLEENNLKAGDVCIFELINRQGPDLKINGVCSGIKSCNRVIVFIILNGCIAVLSPYYHN* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3286 293 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Amo10g3286 293 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Amo10g3286 293 CDD B3_DNA 176 254 IPR003340 GO:0003677
Amo10g3286 293 MobiDBLite consensus disorder prediction 106 121 - -
Amo10g3286 293 ProSiteProfiles B3 DNA-binding domain profile. 212 267 IPR003340 GO:0003677
Amo10g3286 293 PANTHER B3 DOMAIN-CONTAINING 2 254 - -
Amo10g3286 293 MobiDBLite consensus disorder prediction 122 152 - -
Amo10g3286 293 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 254 - -
Amo10g3286 293 Gene3D - 1 66 IPR015300 -
Amo10g3286 293 Gene3D - 164 264 IPR015300 -
Amo10g3286 293 MobiDBLite consensus disorder prediction 81 104 - -
Amo10g3286 293 SUPERFAMILY DNA-binding pseudobarrel domain 176 254 IPR015300 -
Amo10g3286 293 MobiDBLite consensus disorder prediction 80 152 - -
Amo10g3286 293 Pfam B3 DNA binding domain 209 257 IPR003340 GO:0003677
Amo10g3286 293 Pfam B3 DNA binding domain 5 63 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3286 Amo-Chr10 98513150 98514297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3286 5 263 B3 DNA Binding Superfamily AT3G18990 26.821 3.57e-22 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3286 B3 3.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3286 - - aip:107621185 509.22