Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3255 ATGGCTAAAAGATATCAGGGATGTGCAGTAGGAATCGACCTCGGTACAACTTATTCATGTGTTGCTGTGTGGCAGGAAGAGCACCAAAGAGCTGAGATCATCCACAATGACCAAGGCAATCGAACAACACCTTCATGTGTTGCTTTCACTGATAAGCAGAGGTTGATTGGTGATGCTGCTAAGAACCAAGCTGCTTCCAATCCAACTAACACTATCTTTGATGCTAAAAGGTTGATTGGTAGAAAATATAGTGACTCCATTATCAAGAATGACATGATGCTGTGGCCATTTAGAGTCATTCCTGGTGTTGATGACAAACCAATGATTGTTGTTACATATAAGGGCCAGGAGAAGAGTCTTTGTGCAGAAGAAATTTCATCTATGGTTCTAACAAAAATGCGTGAGATTGCAGAGGCCTATTTGGAAAGTCCTGTCAATAATGCAGTAATTACTGTGCCTGCTTATTTCAGTGACTCTCAACGTAAAGCCACAAAAGATGCAGGTGCCATTGCAGGCCTCAATGTCATGAGAATTATCAATGAGCCTACGGCTGCAGCAATTGCATATGGCCTGGACAAGCTAGCTGATTGTAAAGAAGAACGAAATATTTTCATCTTTGACCTTGGTGGTGGTACTTTTGATGTGTCTCTGCTTACCATTAAAGATAAGGTCTTTGAAGTTAAGGCTACTGCAGGAAATACTCACCTTGGCGGAGAAGACTTTGATAACAGGATGGTGAATTACTTCGTAGAAGAGTTCAAAAGGAAGAACAATGTGGATATTAGTGGGAATTCAAAAGCCTTGAGAAGGTTGAGAAGTGCATGCGAAAGGGCAAAAAGGACACTCTCATTTGCTTTTGATACTGTTATTGAAATTGATGCTTTATATCAAGGCATTGACCTTTATTCATCACTCAGCCGTGCCAAGTTTGAGGAACTAAACATGGAACTCTTTAGAAATTGTATGGAAACAGTAGATAAGTGTCTCACTGATGCTAAGATAGACAGGTCTTGTATACATGATCAGCTATTGCAAGAATTCTTCAGAGGTAAGGATCTTTGCAAGAGTATCAATCCGGATGAAGCTGTTGCTTATGGGGCAGCAGTTCAGGCTGCTTTATTGAGTGAAGACATCAAGAAAGCTCCAGAACTGGTTCTATTGGATGTTACACCCCTATCACTTGGTATAAAGACATCTGGAGACCTCATGAGTGTAGTGATTCCTAGGAATACTACCATACCTAAAAAGAGAACAGAAAAATACTTTACAGCTAAAGATAACCATACCATTGTTCCAATACGTGTTTATGAGGGTGAGAGGACAAGAGCCACAGATAACAACTTGCTTGGTTGGTTTAAACTTTCTGGTTTTCCTCATGCTCCTCGTGGCCATCCTTTATATGTATGCTTTGATATAGATGCTGATGGTATCCTAAATGTATCTGCCTGGGAAGAAACTAATTGTTGTAGGAATGAAATTACTATAACCAATGACAATGAAAGACTATCAGCTAAGGAAATTCAAAGACTAATTGAGGAAGCTGAGAATTACAAGGTTGAAGATGCAAATTTCCTTGAGAAGGCTAATGCATTGAGTGATTTGGATCATTATGTTTACAAGATGGAAAAAGCTCTAAAGGATAAAGATATCAGCTCTAAGCTTTGCCCTCTGGACAAGGAGAAGATCCATTCTGCAATTGCTAAGGCCAGAAATCTGCTTGTTGGTGATAACCAGCAGCGAGAAATCAAAGAGTTTGAGAATTGCCTGAAGGAGGTCAAGGGCATCTTTGAACCCATCATGGCCAAGACTAGATAG 1815 0.4011 MAKRYQGCAVGIDLGTTYSCVAVWQEEHQRAEIIHNDQGNRTTPSCVAFTDKQRLIGDAAKNQAASNPTNTIFDAKRLIGRKYSDSIIKNDMMLWPFRVIPGVDDKPMIVVTYKGQEKSLCAEEISSMVLTKMREIAEAYLESPVNNAVITVPAYFSDSQRKATKDAGAIAGLNVMRIINEPTAAAIAYGLDKLADCKEERNIFIFDLGGGTFDVSLLTIKDKVFEVKATAGNTHLGGEDFDNRMVNYFVEEFKRKNNVDISGNSKALRRLRSACERAKRTLSFAFDTVIEIDALYQGIDLYSSLSRAKFEELNMELFRNCMETVDKCLTDAKIDRSCIHDQLLQEFFRGKDLCKSINPDEAVAYGAAVQAALLSEDIKKAPELVLLDVTPLSLGIKTSGDLMSVVIPRNTTIPKKRTEKYFTAKDNHTIVPIRVYEGERTRATDNNLLGWFKLSGFPHAPRGHPLYVCFDIDADGILNVSAWEETNCCRNEITITNDNERLSAKEIQRLIEEAENYKVEDANFLEKANALSDLDHYVYKMEKALKDKDISSKLCPLDKEKIHSAIAKARNLLVGDNQQREIKEFENCLKEVKGIFEPIMAKTR* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3255 604 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Amo10g3255 604 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Amo10g3255 604 Gene3D Actin; Chain A, domain 4 237 320 - -
Amo10g3255 604 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 382 530 IPR029047 -
Amo10g3255 604 PANTHER HEAT SHOCK PROTEIN 70KDA 4 603 IPR013126 GO:0005524|GO:0140662
Amo10g3255 604 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 603 - -
Amo10g3255 604 Gene3D - 73 128 - -
Amo10g3255 604 PRINTS 70kDa heat shock protein signature 148 168 - -
Amo10g3255 604 PRINTS 70kDa heat shock protein signature 8 21 - -
Amo10g3255 604 PRINTS 70kDa heat shock protein signature 38 50 - -
Amo10g3255 604 PRINTS 70kDa heat shock protein signature 211 221 - -
Amo10g3255 604 PRINTS 70kDa heat shock protein signature 383 402 - -
Amo10g3255 604 PRINTS 70kDa heat shock protein signature 60 68 - -
Amo10g3255 604 PRINTS 70kDa heat shock protein signature 357 377 - -
Amo10g3255 604 PRINTS 70kDa heat shock protein signature 463 479 - -
Amo10g3255 604 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 379 531 IPR029047 -
Amo10g3255 604 Gene3D - 10 372 - -
Amo10g3255 604 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Amo10g3255 604 Gene3D - 194 354 - -
Amo10g3255 604 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 531 603 IPR029048 -
Amo10g3255 604 SUPERFAMILY Actin-like ATPase domain 198 375 IPR043129 -
Amo10g3255 604 Gene3D - 532 604 IPR029048 -
Amo10g3255 604 Pfam Hsp70 protein 9 601 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3255 Amo-Chr10 98239097 98241064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3255 1 602 Calmodulin-binding Proteins AT3G12580 64.563 0.0 803