Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3230 ATGGGAAGACCAAGGTGCTTTTTGGACATTAGCATTGGAGACGAATTAGAAGGAAGAATAGTGATTGAACTCTTCGATGACGTGGTTCCCAAAACCGCTGAGAATTTTAGGGCTCTCTGCATTGGCAACAAAGGCATTGCTCCTAACACTCATGTGCCCCTTCATTTCAAGGGTTCTTGCTTTCACCGTGTTATTAAGGGCTTTATGATCCAAGGAGGTGATATATCTGCTGGAGATGGTACTGGAGGAGAGTCGATTTATGGACTGAAGTTTGAAGATGAAAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGTTATCCATGGCGAATTGTGGTCCCAATACAAATGGGTCTCAATTTTTTATCACAACTACCCGAACTCCTCATCTAGACGGCAAACATGTTGTATTTGGGAAGGTAGTCAAAGGAATGGGAGTAGTCCGCTCGGTTGAGCATGTGACAACTGGAGATAATGATTGTCCTACACTTGATGTTAAAATCGTGGATTGTGGGGAAATTCCTGAAGGAGAAGATGATGGAATACTTGACTTTTTCAAGGATGGTGATACTTTCCCTGATTGGCCAGCAGACCTTGACGAGAGACCTGATGAGCTTCAGTGGTGGATGTATGCTGTAGACTCTATTAAAACTTTTGGAAATGGGTATTACAAGAAACAAGACTATAAAATGGCTCAAAGAAAGTATCGCAAGGCTTTGCGCTACTTGGATGTTTGTTGGGAGAAAGAAGGGATTGATGGAGAGAAAAGCATAGCCTTGAGGAAAACTAAGTCTCAAATTTTTACAAACAGTTCTGCATGTAAATTAAAATTAGGAGATCTTAAAGGAGCATTATTCGATGCTGAGTTTGCACTGCGTGAAGAGGACAACAATGTCAAAGCATTATTCCGGCAAGGACAGGCACATATGGCACTCCATGACATAGATGCTGCAGTTGAAAGCTTTAAAAATGCACTGGTCTTAGAGCCAAATGATGCTGGGATTAAGAAGGAACTTGCTGCTGCCAGGAAGAAGGTTGCTGATAGGCGTGACCAGGAGAAAAAGGCATATAGCTCAACTTCAAGGGTGGAAAGCTGCATGGAATGCAAAAGATACTATCTTGATCCCATCGTTATTAGAAGTACCAGAAATTAA 1152 0.4175 MGRPRCFLDISIGDELEGRIVIELFDDVVPKTAENFRALCIGNKGIAPNTHVPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANCGPNTNGSQFFITTTRTPHLDGKHVVFGKVVKGMGVVRSVEHVTTGDNDCPTLDVKIVDCGEIPEGEDDGILDFFKDGDTFPDWPADLDERPDELQWWMYAVDSIKTFGNGYYKKQDYKMAQRKYRKALRYLDVCWEKEGIDGEKSIALRKTKSQIFTNSSACKLKLGDLKGALFDAEFALREEDNNVKALFRQGQAHMALHDIDAAVESFKNALVLEPNDAGIKKELAAARKKVADRRDQEKKAYSSTSRVESCMECKRYYLDPIVIRSTRN* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3230 383 CDD cyclophilin_ABH_like 4 171 - -
Amo10g3230 383 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 358 - -
Amo10g3230 383 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Amo10g3230 383 SUPERFAMILY TPR-like 212 353 IPR011990 GO:0005515
Amo10g3230 383 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Amo10g3230 383 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Amo10g3230 383 Gene3D - 1 179 IPR029000 -
Amo10g3230 383 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Amo10g3230 383 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Amo10g3230 383 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Amo10g3230 383 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Amo10g3230 383 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Amo10g3230 383 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Amo10g3230 383 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 358 - -
Amo10g3230 383 Pfam Tetratricopeptide repeat 299 331 IPR013105 -
Amo10g3230 383 SUPERFAMILY Cyclophilin-like 3 175 IPR029000 -
Amo10g3230 383 SMART tpr_5 264 297 IPR019734 GO:0005515
Amo10g3230 383 SMART tpr_5 212 245 IPR019734 GO:0005515
Amo10g3230 383 SMART tpr_5 298 331 IPR019734 GO:0005515
Amo10g3230 383 Gene3D Tetratricopeptide repeat domain 208 359 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3230 Amo-Chr10 98050176 98053942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3230 18 170 U-box Gene Family AT5G67530 44.156 1.27e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3230 K05864 - gmx:100804110 613.224