Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3228 ATGCTATATATAGTGAGCGTTAGTCAATTAAGCAAGATCATACAAAGATACACTATAAATCAGTATATAATTATATATAGCAATATGAGTTCCAGCAATAATAATTCCCAGAAGGAGGTTTACCATGATGATTTCACTAAAGCAGCTTCATTAGCATTTGCTCAAGTGTTTTCTTCAATCTTGGAGGCTGCTATTGATATGAACTTGTTTGATATCATATCAAAGGCAGAGAGTTCGTTAGGCATGTCTGCTTCTGAGATTGCATCTAAGATTCCAAAGCAACACAGTGAGATGGGTAGCAGACTTGAACGCATGCTGCCATCTTTGGTGGCTCGTTCTCTTCTCTCTTGCTCCATTCGCACCATTAATGAAGACGGTGACACTGAGAGGGTTTATGCAGTTTCCCCTGTTGGACAATACTTCAGACCTAGTCATGATCAATCGGAAAACTCCTTGGCTGCAATGTCAACTTTATTCTATCGAGGATATCGTCATGTTTGGAAAGATACGAAAGATGCAATATTGGATGCTAACAATCACAACCATTTCCAAAGAATGTATGGAAAGATGGCATTTGAATATATGGAAACAGACAGAGAGTTATGTAACCTTTTCGGAGAAGCAATGTCTCAAGCAGGGCCTTTAGGAGTGAAATCAATCCTTGATGCATATAAAGGTGGCTTTGATGGAATATCAACGTTAGTTGATGTAGGAGGTGGATATGGACAAGTCCTCAAACAAATTCTCTTCCAATATCCATCAATTCAAAAAGCAATTAATTTTGATTTGCCTCATGTTGTGAAAAACGCACCCCCTCATCCAGGGATAGAGCATATCGGGGGAGACATGTTTGAAAGTGTTCCAAAAGGTGATGCCATTTTGATCAAGCATGTATGTCATAACTGGGGAGATGAAGAATGTGTCAAGTTTTTGAGAAAGTGCCACGAAGCTTTGCCAGCGGATGGGAAGGTTATAGTTTTGGAAATTTTGGTGCCAGAAATTCCCAAGTCGACATCAAAGGATATTTGTGCTGTGGACATGGATTACAGTATGTTTCTAGTTCATGGTGGAAAGGAAAGAACCGAGAAACAATATGAGAAATTATGCAAGAGGTCAGGATTTTCCAGATTTAAGGTTGCTTGCAATGATTCAAGTGCCATTGATGCAGTGATGGAGTTTTACAAATAA 1188 0.3906 MLYIVSVSQLSKIIQRYTINQYIIIYSNMSSSNNNSQKEVYHDDFTKAASLAFAQVFSSILEAAIDMNLFDIISKAESSLGMSASEIASKIPKQHSEMGSRLERMLPSLVARSLLSCSIRTINEDGDTERVYAVSPVGQYFRPSHDQSENSLAAMSTLFYRGYRHVWKDTKDAILDANNHNHFQRMYGKMAFEYMETDRELCNLFGEAMSQAGPLGVKSILDAYKGGFDGISTLVDVGGGYGQVLKQILFQYPSIQKAINFDLPHVVKNAPPHPGIEHIGGDMFESVPKGDAILIKHVCHNWGDEECVKFLRKCHEALPADGKVIVLEILVPEIPKSTSKDICAVDMDYSMFLVHGGKERTEKQYEKLCKRSGFSRFKVACNDSSAIDAVMEFYK* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3228 395 SUPERFAMILY "Winged helix" DNA-binding domain 43 145 IPR036390 -
Amo10g3228 395 Gene3D - 56 220 IPR036388 -
Amo10g3228 395 Pfam Dimerisation domain 60 109 IPR012967 GO:0046983
Amo10g3228 395 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 49 395 IPR016461 GO:0008168
Amo10g3228 395 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 155 382 IPR029063 -
Amo10g3228 395 CDD AdoMet_MTases 233 326 - -
Amo10g3228 395 PIRSF O-mtase 25 395 IPR016461 GO:0008168
Amo10g3228 395 PANTHER O-METHYLTRANSFERASE 27 395 IPR016461 GO:0008168
Amo10g3228 395 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 27 395 - -
Amo10g3228 395 Pfam O-methyltransferase domain 167 375 IPR001077 GO:0008171
Amo10g3228 395 Gene3D Vaccinia Virus protein VP39 202 382 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3228 Amo-Chr10 98042757 98045108 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3228 48 382 Monolignol Biosynthesis Gene Families AT5G54160 46.471 7.42e-96 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3228 - - gmx:100779492 417.927